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DRAGON-Data: a platform and protocol for integrating genomic and phenotypic data across large psychiatric cohorts.

Authors :
Lynham AJ
Knott S
Underwood JFG
Hubbard L
Agha SS
Bisson JI
van den Bree MBM
Chawner SJRA
Craddock N
O'Donovan M
Jones IR
Kirov G
Langley K
Martin J
Rice F
Roberts NP
Thapar A
Anney R
Owen MJ
Hall J
PardiƱas AF
Walters JTR
Source :
BJPsych open [BJPsych Open] 2023 Feb 08; Vol. 9 (2), pp. e32. Date of Electronic Publication: 2023 Feb 08.
Publication Year :
2023

Abstract

Background: Current psychiatric diagnoses, although heritable, have not been clearly mapped onto distinct underlying pathogenic processes. The same symptoms often occur in multiple disorders, and a substantial proportion of both genetic and environmental risk factors are shared across disorders. However, the relationship between shared symptoms and shared genetic liability is still poorly understood.<br />Aims: Well-characterised, cross-disorder samples are needed to investigate this matter, but few currently exist. Our aim is to develop procedures to purposely curate and aggregate genotypic and phenotypic data in psychiatric research.<br />Method: As part of the Cardiff MRC Mental Health Data Pathfinder initiative, we have curated and harmonised phenotypic and genetic information from 15 studies to create a new data repository, DRAGON-Data. To date, DRAGON-Data includes over 45 000 individuals: adults and children with neurodevelopmental or psychiatric diagnoses, affected probands within collected families and individuals who carry a known neurodevelopmental risk copy number variant.<br />Results: We have processed the available phenotype information to derive core variables that can be reliably analysed across groups. In addition, all data-sets with genotype information have undergone rigorous quality control, imputation, copy number variant calling and polygenic score generation.<br />Conclusions: DRAGON-Data combines genetic and non-genetic information, and is available as a resource for research across traditional psychiatric diagnostic categories. Algorithms and pipelines used for data harmonisation are currently publicly available for the scientific community, and an appropriate data-sharing protocol will be developed as part of ongoing projects (DATAMIND) in partnership with Health Data Research UK.

Details

Language :
English
ISSN :
2056-4724
Volume :
9
Issue :
2
Database :
MEDLINE
Journal :
BJPsych open
Publication Type :
Academic Journal
Accession number :
36752340
Full Text :
https://doi.org/10.1192/bjo.2022.636