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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments.

Authors :
Goldman RP
Moseley R
Roehner N
Cummins B
Vrana JD
Clowers KJ
Bryce D
Beal J
DeHaven M
Nowak J
Higa T
Biggers V
Lee P
Hunt JP
Mosqueda L
Haase SB
Weston M
Zheng G
Deckard A
Gopaulakrishnan S
Stubbs JF
Gaffney NI
Vaughn MW
Maheshri N
Mikhalev E
Bartley B
Markeloff R
Mitchell T
Nguyen T
Sumorok D
Walczak N
Myers C
Zundel Z
Hatch B
Scholz J
Colonna-Romano J
Source :
Synthetic biology (Oxford, England) [Synth Biol (Oxf)] 2022 Oct 06; Vol. 7 (1), pp. ysac018. Date of Electronic Publication: 2022 Oct 06 (Print Publication: 2022).
Publication Year :
2022

Abstract

We describe an experimental campaign that replicated the performance assessment of logic gates engineered into cells of Saccharomyces cerevisiae by Gander et al. Our experimental campaign used a novel high-throughput experimentation framework developed under Defense Advanced Research Projects Agency's Synergistic Discovery and Design program: a remote robotic lab at Strateos executed a parameterized experimental protocol. Using this protocol and robotic execution, we generated two orders of magnitude more flow cytometry data than the original experiments. We discuss our results, which largely, but not completely, agree with the original report and make some remarks about lessons learned. Graphical Abstract .<br /> (© The Author(s) 2022. Published by Oxford University Press.)

Details

Language :
English
ISSN :
2397-7000
Volume :
7
Issue :
1
Database :
MEDLINE
Journal :
Synthetic biology (Oxford, England)
Publication Type :
Academic Journal
Accession number :
36285185
Full Text :
https://doi.org/10.1093/synbio/ysac018