Elucidating the Role of O 2 Uncoupling in the Oxidative Biodegradation of Organic Contaminants by Rieske Non-heme Iron Dioxygenases.

Oxygenations of aromatic soil and water contaminants with molecular O ₂ catalyzed by Rieske dioxygenases are frequent initial steps of biodegradation in natural and engineered environments. Many of these non-heme ferrous iron enzymes are known to be involved in contaminant metabolism, but the understanding of enzyme-substrate interactions that lead to successful biodegradation is still elusive. Here, we studied the mechanisms of O ₂ activation and substrate hydroxylation of two nitroarene dioxygenases to evaluate enzyme- and substrate-specific factors that determine the efficiency of oxygenated product formation. Experiments in enzyme assays of 2-nitrotoluene dioxygenase (2NTDO) and nitrobenzene dioxygenase (NBDO) with methyl-, fluoro-, chloro-, and hydroxy-substituted nitroaromatic substrates reveal that typically 20-100% of the enzyme's activity involves unproductive paths of O ₂ activation with generation of reactive oxygen species through so-called O ₂ uncoupling. The ¹⁸ O and ¹³ C kinetic isotope effects of O ₂ activation and nitroaromatic substrate hydroxylation, respectively, suggest that O ₂ uncoupling occurs after generation of Fe ^III -(hydro)peroxo species in the catalytic cycle. While 2NTDO hydroxylates ortho -substituted nitroaromatic substrates more efficiently, NBDO favors meta -substituted, presumably due to distinct active site residues of the two enzymes. Our data implies, however, that the O ₂ uncoupling and hydroxylation activity cannot be assessed from simple structure-reactivity relationships. By quantifying O ₂ uncoupling by Rieske dioxygenases, our work provides a mechanistic link between contaminant biodegradation, the generation of reactive oxygen species, and possible adaptation strategies of microorganisms to the exposure of new contaminants.
Competing Interests: The authors declare no competing financial interest.
(© 2022 The Authors. Published by American Chemical Society.)