Genomic insight into the integrative conjugative elements from ICE Hpa1 family.

Integrative conjugative elements (ICEs) are important carriers for disseminating resistance genes. We have previously reported a novel element ICE Hpa1 carrying seven antibiotic resistance genes, which could be self-transmissible relying on the novel T4SS. To identify novel ICE Hpa1 variants from 211 strains and novel T4SS encoded in ICE Hpa1 , and to explore the relationships in these ICEs, four complete sequences of ICEs were identified by WGS analysis and antimicrobial susceptibility testing was determined by broth microdilution. In addition, a comparative analysis of these ICEs was conducted with bioinformatic tools, and the transfer abilities of these ICEs were confirmed by conjugation. Four ICE Hpa1 variants ICE Gpa1818 , ICE Gpa1808 , ICE Gpa1807 , and ICE Gpa1815 with different resistance gene profiles were characterized, and their hosts showed different resistance spectrums. All ICEs shared the same backbone and were inserted into the tRNA ^Leu site, and all resistance regions were inserted into the same target site between the accessory and integration regions. This study analyzed complete sequences of ICEs from the ICE Hpa1 family and identified novel T4SS and insertion element IS Gpa2 . Diverse resistance genes extensively exist in these ICEs, serving as a reservoir for resistance genes and facilitating their dissemination.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
(Copyright © 2022 Sun, Zhang, Miao, Zhai, Pan, Yuan, Yan, Wu and Hu.)