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Genome-wide association study identifies Sjögren's risk loci with functional implications in immune and glandular cells.

Authors :
Khatri B
Tessneer KL
Rasmussen A
Aghakhanian F
Reksten TR
Adler A
Alevizos I
Anaya JM
Aqrawi LA
Baecklund E
Brun JG
Bucher SM
Eloranta ML
Engelke F
Forsblad-d'Elia H
Glenn SB
Hammenfors D
Imgenberg-Kreuz J
Jensen JL
Johnsen SJA
Jonsson MV
Kvarnström M
Kelly JA
Li H
Mandl T
Martín J
Nocturne G
Norheim KB
Palm Ø
Skarstein K
Stolarczyk AM
Taylor KE
Teruel M
Theander E
Venuturupalli S
Wallace DJ
Grundahl KM
Hefner KS
Radfar L
Lewis DM
Stone DU
Kaufman CE
Brennan MT
Guthridge JM
James JA
Scofield RH
Gaffney PM
Criswell LA
Jonsson R
Eriksson P
Bowman SJ
Omdal R
Rönnblom L
Warner B
Rischmueller M
Witte T
Farris AD
Mariette X
Alarcon-Riquelme ME
Shiboski CH
Wahren-Herlenius M
Ng WF
Sivils KL
Adrianto I
Nordmark G
Lessard CJ
Source :
Nature communications [Nat Commun] 2022 Jul 27; Vol. 13 (1), pp. 4287. Date of Electronic Publication: 2022 Jul 27.
Publication Year :
2022

Abstract

Sjögren's disease is a complex autoimmune disease with twelve established susceptibility loci. This genome-wide association study (GWAS) identifies ten novel genome-wide significant (GWS) regions in Sjögren's cases of European ancestry: CD247, NAB1, PTTG1-MIR146A, PRDM1-ATG5, TNFAIP3, XKR6, MAPT-CRHR1, RPTOR-CHMP6-BAIAP6, TYK2, SYNGR1. Polygenic risk scores yield predictability (AUROC = 0.71) and relative risk of 12.08. Interrogation of bioinformatics databases refine the associations, define local regulatory networks of GWS SNPs from the 95% credible set, and expand the implicated gene list to >40. Many GWS SNPs are eQTLs for genes within topologically associated domains in immune cells and/or eQTLs in the main target tissue, salivary glands.<br /> (© 2022. The Author(s).)

Details

Language :
English
ISSN :
2041-1723
Volume :
13
Issue :
1
Database :
MEDLINE
Journal :
Nature communications
Publication Type :
Academic Journal
Accession number :
35896530
Full Text :
https://doi.org/10.1038/s41467-022-30773-y