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Increased expression of tribbles homolog 3 predicts poor prognosis and correlates with tumor immunity in clear cell renal cell carcinoma: a bioinformatics study.
- Source :
-
Bioengineered [Bioengineered] 2022 May; Vol. 13 (5), pp. 14000-14012. - Publication Year :
- 2022
-
Abstract
- Tribbles homolog 3 (TRIB3), a pseudokinase that regulates multiple intracellular signaling pathways, has been reported to promote the growth of multiple tumors. However, its role in clear cell renal cell carcinoma (ccRCC) remains unelucidated. We evaluated the role of TRIB3 in ccRCC using publicly available data from The Cancer Genome Atlas and analyzed its relationship with the tumor microenvironment; moreover, we used gene knockout and overexpression techniques to detect the effects of TRIB3 on the biological behavior of ccRCC cells. RT-qPCR and western blotting were used to detect transfection efficiency, and the invasiveness of ccRCC cells was determined by Transwell migration assays. We found that TRIB3 overexpression was significantly associated with increased grade, stage, and distant metastasis, positively correlated with ccRCC invasiveness, and also an independent risk factor for overall survival (OS). In addition, 361 differentially expressed genes (DEGs) related to TRIB3 were identified. Functional enrichment analysis showed that DEGs were mainly enriched in humoral immune responses, collagen-containing extracellular matrix, and serine hydrolase activity. Immune landscape characterization revealed that TRIB3 expression was significantly and negatively associated with CD8 <superscript>+</superscript> T and hematopoietic stem cells, whereas it was positively associated with NK T and macrophage M1 cells. Single-cell sequencing showed that localization and binding targets of TRIB3 mainly involved monocytes/macrophages and CD4 <superscript>+</superscript> and CD8 <superscript>+</superscript> T cells. Overall, our study revealed that elevated TRIB3 expression represents a promising prognostic marker for ccRCC patients and may play a key role in tumor microenvironment modulation.
- Subjects :
- Biomarkers, Tumor genetics
CD8-Positive T-Lymphocytes metabolism
CD8-Positive T-Lymphocytes pathology
Computational Biology
Gene Expression Regulation, Neoplastic
Humans
Prognosis
Protein Serine-Threonine Kinases metabolism
Tumor Microenvironment genetics
Carcinoma, Renal Cell metabolism
Cell Cycle Proteins metabolism
Kidney Neoplasms genetics
Kidney Neoplasms pathology
Protein Serine-Threonine Kinases antagonists & inhibitors
Repressor Proteins metabolism
Subjects
Details
- Language :
- English
- ISSN :
- 2165-5987
- Volume :
- 13
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Bioengineered
- Publication Type :
- Academic Journal
- Accession number :
- 35726370
- Full Text :
- https://doi.org/10.1080/21655979.2022.2086380