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Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources.

Authors :
Tsueng G
Mullen JL
Alkuzweny M
Cano M
Rush B
Haag E
Curators O
Lin J
Welzel DJ
Zhou X
Qian Z
Latif AA
Hufbauer E
Zeller M
Andersen KG
Wu C
Su AI
Gangavarapu K
Hughes LD
Source :
BioRxiv : the preprint server for biology [bioRxiv] 2022 Dec 07. Date of Electronic Publication: 2022 Dec 07.
Publication Year :
2022

Abstract

To combat the ongoing COVID-19 pandemic, scientists have been conducting research at breakneck speeds, producing over 52,000 peer-reviewed articles within the first year. To address the challenge in tracking the vast amount of new research located in separate repositories, we developed outbreak.info Research Library, a standardized, searchable interface of COVID-19 and SARS-CoV-2 resources. Unifying metadata from sixteen repositories, we assembled a collection of over 350,000 publications, clinical trials, datasets, protocols, and other resources as of October 2022. We used a rigorous schema to enforce consistency across different sources and resource types and linked related resources. Researchers can quickly search the latest research across data repositories, regardless of resource type or repository location, via a search interface, public API, and R package. Finally, we discuss the challenges inherent in combining metadata from scattered and heterogeneous resources and provide recommendations to streamline this process to aid scientific research.<br />Competing Interests: Conflicts of Interest KGA has received consulting fees and/or compensated expert testimony on SARS-CoV-2 and the COVID-19 pandemic.

Details

Language :
English
ISSN :
2692-8205
Database :
MEDLINE
Journal :
BioRxiv : the preprint server for biology
Accession number :
35132411
Full Text :
https://doi.org/10.1101/2022.01.20.477133