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INTS8 is a therapeutic target for intrahepatic cholangiocarcinoma via the integration of bioinformatics analysis and experimental validation.
- Source :
-
Scientific reports [Sci Rep] 2021 Dec 08; Vol. 11 (1), pp. 23649. Date of Electronic Publication: 2021 Dec 08. - Publication Year :
- 2021
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Abstract
- Intrahepatic cholangiocarcinoma (CHOL) remains a rare malignancy, ranking as the leading lethal primary liver cancer worldwide. However, the biological functions of integrator complex subunit 8 (INTS8) in CHOL remain unknown. Thus, this research aimed to explore the potential role of INTS8 as a novel diagnostic or therapeutic target in CHOL. Differentially expressed genes (DEGs) in two Gene Expression Omnibus (GEO) datasets were obtained by the "RRA" package in R software. The "maftools" package was used to visualize the CHOL mutation data from The Cancer Genome Atlas (TCGA) database. The expression of INTS8 was detected by performing quantitative reverse transcription-PCR (qRT-PCR) and immunohistochemistry in cell lines and human samples. The association between subtypes of tumour-infiltrating immune cells (TIICs) and INTS8 expression in CHOL was determined by using CIBERSORT tools. We evaluated the correlations between INTS8 expression and mismatch repair (MMR) genes and DNA methyltransferases (DNMTs) in pan-cancer analysis. Finally, the pan-cancer prognostic signature of INTS8 was identified by univariate analysis. We obtained the mutation landscapes of an RRA gene set in CHOL. The expression of INTS8 was upregulated in CHOL cell lines and human CHOL samples. Furthermore, INTS8 expression was closely associated with a distinct landscape of TIICs, MMR genes, and DNMTs in CHOL. In addition, the high INTS8 expression group presented significantly poor outcomes, including overall survival (OS), disease-specific survival (DSS) and disease-free interval (DFI) (pā<ā0.05) in pan-cancer. INTS8 contributes to the tumorigenesis and progression of CHOL. Our study highlights the significant role of INTS8 in CHOL and pan-cancers, providing a valuable molecular target for cancer research.<br /> (© 2021. The Author(s).)
- Subjects :
- Bile Duct Neoplasms genetics
Bile Duct Neoplasms pathology
Biomarkers, Tumor genetics
Cell Line, Tumor
Cholangiocarcinoma genetics
Cholangiocarcinoma pathology
Databases, Genetic
Gene Expression Regulation, Neoplastic
Humans
Prognosis
Protein Subunits genetics
Reverse Transcriptase Polymerase Chain Reaction
Bile Duct Neoplasms therapy
Cholangiocarcinoma therapy
Computational Biology methods
Protein Subunits physiology
Subjects
Details
- Language :
- English
- ISSN :
- 2045-2322
- Volume :
- 11
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Scientific reports
- Publication Type :
- Academic Journal
- Accession number :
- 34880328
- Full Text :
- https://doi.org/10.1038/s41598-021-03017-0