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Manipulating cellular microRNAs and analyzing high-dimensional gene expression data using machine learning workflows.

Authors :
Saini V
Joglekar MV
Wong WKM
Jiang G
Nassif NT
Simpson AM
Ma RCW
Dalgaard LT
Hardikar AA
Source :
STAR protocols [STAR Protoc] 2021 Oct 23; Vol. 2 (4), pp. 100910. Date of Electronic Publication: 2021 Oct 23 (Print Publication: 2021).
Publication Year :
2021

Abstract

MicroRNAs (miRNAs) are elements of the gene regulatory network and manipulating their abundance is essential toward elucidating their role in patho-physiological conditions. We present a detailed workflow that identifies important miRNAs using a machine learning algorithm. We then provide optimized techniques to validate the identified miRNAs through over-expression/loss-of-function studies. Overall, these protocols apply to any field in biology where high-dimensional data are produced. For complete details on the use and execution of this protocol, please refer to Wong et al. (2021a).<br />Competing Interests: The authors declare no competing interests.<br /> (© 2021.)

Details

Language :
English
ISSN :
2666-1667
Volume :
2
Issue :
4
Database :
MEDLINE
Journal :
STAR protocols
Publication Type :
Academic Journal
Accession number :
34746868
Full Text :
https://doi.org/10.1016/j.xpro.2021.100910