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Metagenomic Studies of Viruses in Weeds and Wild Plants: A Powerful Approach to Characterise Variable Virus Communities.
- Source :
-
Viruses [Viruses] 2021 Sep 27; Vol. 13 (10). Date of Electronic Publication: 2021 Sep 27. - Publication Year :
- 2021
-
Abstract
- High throughput sequencing (HTS) has revolutionised virus detection and discovery, allowing for the untargeted characterisation of whole viromes. Viral metagenomics studies have demonstrated the ubiquity of virus infection - often in the absence of disease symptoms - and tend to discover many novel viruses, highlighting the small fraction of virus biodiversity described to date. The majority of the studies using high-throughput sequencing to characterise plant viromes have focused on economically important crops, and only a small number of studies have considered weeds and wild plants. Characterising the viromes of wild plants is highly relevant, as these plants can affect disease dynamics in crops, often by acting as viral reservoirs. Moreover, the viruses in unmanaged systems may also have important effects on wild plant populations and communities. Here, we review metagenomic studies on weeds and wild plants to show the benefits and limitations of this approach and identify knowledge gaps. We consider key genomics developments that are likely to benefit the field in the near future. Although only a small number of HTS studies have been performed on weeds and wild plants, these studies have already discovered many novel viruses, demonstrated unexpected trends in virus distributions, and highlighted the potential of metagenomics as an approach.
- Subjects :
- Biodiversity
Computational Biology methods
DNA Viruses genetics
Genome, Viral genetics
High-Throughput Nucleotide Sequencing methods
Metagenome genetics
Plants genetics
Plants virology
Viruses classification
Viruses genetics
Viruses, Unclassified genetics
Metagenomics methods
Plant Weeds genetics
Plant Weeds virology
Subjects
Details
- Language :
- English
- ISSN :
- 1999-4915
- Volume :
- 13
- Issue :
- 10
- Database :
- MEDLINE
- Journal :
- Viruses
- Publication Type :
- Academic Journal
- Accession number :
- 34696369
- Full Text :
- https://doi.org/10.3390/v13101939