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iNucs: inter-nucleosome interactions.

Authors :
Oveisi M
Shukla M
Seymen N
Ohno M
Taniguchi Y
Nahata S
Loos R
Mufti GJ
Allshire RC
Dimitrov S
Karimi MM
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2021 Dec 07; Vol. 37 (23), pp. 4562-4563.
Publication Year :
2021

Abstract

Motivation: Deciphering nucleosome-nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available.<br />Results: We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools.<br />Availabilityand Implementation: https://github.com/Karimi-Lab/inucs/.<br />Supplementary Information: Supplementary data are available at Bioinformatics online.<br /> (© The Author(s) 2021. Published by Oxford University Press.)

Subjects

Subjects :
Nucleosomes
Software

Details

Language :
English
ISSN :
1367-4811
Volume :
37
Issue :
23
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
34623394
Full Text :
https://doi.org/10.1093/bioinformatics/btab698