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Photobacterium arenosum sp. nov., isolated from marine sediment sand.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2021 Oct; Vol. 71 (10). - Publication Year :
- 2021
-
Abstract
- A Gram-stain-negative, aerobic, motile, short rod-shaped, catalase-negative and oxidase-positive bacterium, strain CAU 1568 <superscript>T</superscript> , was isolated from marine sediment sand sampled at Sido Island in the Republic of Korea. The optimum conditions for growth were at 25-30 °C, at pH 6.5-8.5 and with 0-4.0 % (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CAU 1568 <superscript>T</superscript> was a member of the genus Photobacterium with high similarity to Photobacterium salinisoli JCM 30852 <superscript>T</superscript> (97.7 %), Photobacterium halotolerans KACC 17089 <superscript>T</superscript> (97.3 %) and Photobacterium galatheae LMG F28894 <superscript>T</superscript> (97.3 %). The predominant cellular fatty acids were C <subscript>16 : 0</subscript> , summed feature 3 (C <subscript>16 : 1</subscript> ω 6 c and/or C <subscript>16 : 1</subscript> ω 7 c ) and summed feature 8 (C <subscript>18 : 1</subscript> ω 7 c and/or C <subscript>18 : 1</subscript> ω 6 c ), with Q-8 as the major of isoprenoid quinone. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerols, phosphatidylcholine, phosphatidylethanolamine, phospholipid, two aminophospholipids and three unidentified lipids. The whole genome size of strain CAU 1568 <superscript>T</superscript> was 4.8 Mb with 50.1 mol% G+C content; including 38 contigs and 4233 protein-coding genes. These taxonomic data support CAU 1568 <superscript>T</superscript> as representing a novel Photobacterium species, for which the name Photobacterium arenosum sp. nov. is proposed. The type strain of this novel species is CAU 1568 <superscript>T</superscript> (=KCTC 82404 <superscript>T</superscript> =MCCC 1K05668 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Geologic Sediments microbiology
Islands
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Seawater microbiology
Sequence Analysis, DNA
Ubiquinone chemistry
Photobacterium classification
Photobacterium isolation & purification
Phylogeny
Sand microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 71
- Issue :
- 10
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 34605765
- Full Text :
- https://doi.org/10.1099/ijsem.0.005034