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In Silico Target Prediction of Overexpressed microRNAs from LPS-Challenged Zebrafish ( Danio rerio ) Treated with the Novel Anti-Inflammatory Peptide Tn P.
- Source :
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International journal of molecular sciences [Int J Mol Sci] 2021 Jul 01; Vol. 22 (13). Date of Electronic Publication: 2021 Jul 01. - Publication Year :
- 2021
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Abstract
- miRNAs regulate gene expression post-transcriptionally in various processes, e.g., immunity, development, and diseases. Since their experimental analysis is complex, in silico target prediction is important for directing investigations. Tn P is a candidate peptide for anti-inflammatory therapy, first discovered in the venom of Thalassophryne nattereri , which led to miRNAs overexpression in LPS-inflamed zebrafish post-treatment. This work aimed to predict miR-21, miR-122, miR-731, and miR-26 targets using overlapped results of DIANA microT-CDS and TargetScanFish software. This study described 513 miRNAs targets using highly specific thresholds. Using Gene Ontology over-representation analysis, we identified their main roles in regulating gene expression, neurogenesis, DNA-binding, transcription regulation, immune system process, and inflammatory response. miRNAs act in post-transcriptional regulation, but we revealed that their targets are strongly related to expression regulation at the transcriptional level, e.g., transcription factors proteins. A few predicted genes participated concomitantly in many biological processes and molecular functions, such as foxo3a , rbpjb , rxrbb , tyrobp , hes6 , zic5 , smad1 , e2f7 , and npas4a . Others were particularly involved in innate immunity regulation: il17a/f2 , pik3r3b , and nlrc6 . Together, these findings not only provide new insights into the miRNAs mode of action but also raise hope for Tn P therapy and may direct future experimental investigations.
- Subjects :
- Animals
Computational Biology methods
Computer Simulation
DNA-Binding Proteins metabolism
Gene Ontology
Immunity, Innate genetics
Lipopolysaccharides pharmacology
MicroRNAs biosynthesis
MicroRNAs metabolism
Transcription Factors metabolism
Transcriptome
Zebrafish
Anti-Inflammatory Agents pharmacology
Fish Venoms pharmacology
Gene Expression drug effects
MicroRNAs genetics
Peptides pharmacology
Subjects
Details
- Language :
- English
- ISSN :
- 1422-0067
- Volume :
- 22
- Issue :
- 13
- Database :
- MEDLINE
- Journal :
- International journal of molecular sciences
- Publication Type :
- Academic Journal
- Accession number :
- 34281170
- Full Text :
- https://doi.org/10.3390/ijms22137117