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Transcriptomic analysis links hepatocellular carcinoma (HCC) in HZE ion irradiated mice to a human HCC subtype with favorable outcomes.
- Source :
-
Scientific reports [Sci Rep] 2021 Jul 07; Vol. 11 (1), pp. 14052. Date of Electronic Publication: 2021 Jul 07. - Publication Year :
- 2021
-
Abstract
- High-charge, high-energy ion particle (HZE) radiations are extraterrestrial in origin and characterized by high linear energy transfer (high-LET), which causes more severe cell damage than low-LET radiations like γ-rays or photons. High-LET radiation poses potential cancer risks for astronauts on deep space missions, but the studies of its carcinogenic effects have relied heavily on animal models. It remains uncertain whether such data are applicable to human disease. Here, we used genomics approaches to directly compare high-LET radiation-induced, low-LET radiation-induced and spontaneous hepatocellular carcinoma (HCC) in mice with a human HCC cohort from The Cancer Genome Atlas (TCGA). We identified common molecular pathways between mouse and human HCC and discovered a subset of orthologous genes (mR-HCC) that associated high-LET radiation-induced mouse HCC with a subgroup (mrHCC2) of the TCGA cohort. The mrHCC2 TCGA cohort was more enriched with tumor-suppressing immune cells and showed a better prognostic outcome than other patient subgroups.
- Subjects :
- Animals
Biomarkers, Tumor
Carcinoma, Hepatocellular diagnosis
Carcinoma, Hepatocellular metabolism
Carcinoma, Hepatocellular mortality
Computational Biology methods
Disease Models, Animal
Humans
Liver Neoplasms diagnosis
Liver Neoplasms metabolism
Liver Neoplasms mortality
Mice
Prognosis
Tumor Microenvironment genetics
Tumor Microenvironment immunology
Carcinoma, Hepatocellular genetics
Gene Expression Profiling
Gene Expression Regulation, Neoplastic radiation effects
Liver Neoplasms genetics
Radiation, Ionizing
Transcriptome
Subjects
Details
- Language :
- English
- ISSN :
- 2045-2322
- Volume :
- 11
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Scientific reports
- Publication Type :
- Academic Journal
- Accession number :
- 34234215
- Full Text :
- https://doi.org/10.1038/s41598-021-93467-3