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BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration.
- Source :
-
PLoS computational biology [PLoS Comput Biol] 2021 Jun 15; Vol. 17 (6), pp. e1009066. Date of Electronic Publication: 2021 Jun 15 (Print Publication: 2021). - Publication Year :
- 2021
-
Abstract
- Collective dynamics in multicellular systems such as biological organs and tissues plays a key role in biological development, regeneration, and pathological conditions. Collective tissue dynamics-understood as population behaviour arising from the interplay of the constituting discrete cells-can be studied with on- and off-lattice agent-based models. However, classical on-lattice agent-based models, also known as cellular automata, fail to replicate key aspects of collective migration, which is a central instance of collective behaviour in multicellular systems. To overcome drawbacks of classical on-lattice models, we introduce an on-lattice, agent-based modelling class for collective cell migration, which we call biological lattice-gas cellular automaton (BIO-LGCA). The BIO-LGCA is characterised by synchronous time updates, and the explicit consideration of individual cell velocities. While rules in classical cellular automata are typically chosen ad hoc, rules for cell-cell and cell-environment interactions in the BIO-LGCA can also be derived from experimental cell migration data or biophysical laws for individual cell migration. We introduce elementary BIO-LGCA models of fundamental cell interactions, which may be combined in a modular fashion to model complex multicellular phenomena. We exemplify the mathematical mean-field analysis of specific BIO-LGCA models, which allows to explain collective behaviour. The first example predicts the formation of clusters in adhesively interacting cells. The second example is based on a novel BIO-LGCA combining adhesive interactions and alignment. For this model, our analysis clarifies the nature of the recently discovered invasion plasticity of breast cancer cells in heterogeneous environments.<br />Competing Interests: The authors have declared that no competing interests exist.
- Subjects :
- Biophysical Phenomena
Breast Neoplasms pathology
Breast Neoplasms physiopathology
Cell Adhesion physiology
Cell Communication physiology
Computational Biology
Computer Simulation
Female
Humans
Neoplasm Invasiveness pathology
Neoplasm Invasiveness physiopathology
Systems Biology
Cell Movement physiology
Models, Biological
Systems Analysis
Subjects
Details
- Language :
- English
- ISSN :
- 1553-7358
- Volume :
- 17
- Issue :
- 6
- Database :
- MEDLINE
- Journal :
- PLoS computational biology
- Publication Type :
- Academic Journal
- Accession number :
- 34129639
- Full Text :
- https://doi.org/10.1371/journal.pcbi.1009066