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l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate.
- Source :
-
ACS chemical biology [ACS Chem Biol] 2021 Jan 15; Vol. 16 (1), pp. 86-95. Date of Electronic Publication: 2020 Dec 18. - Publication Year :
- 2021
-
Abstract
- l-Threonine transaldolases (lTTAs) are a poorly characterized class of pyridoxal-5'-phosphate (PLP) dependent enzymes responsible for the biosynthesis of diverse β-hydroxy amino acids. Here, we study the catalytic mechanism of ObiH, an lTTA essential for biosynthesis of the β-lactone natural product obafluorin. Heterologously expressed ObiH purifies as a mixture of chemical states including a catalytically inactive form of the PLP cofactor. Photoexcitation of ObiH promotes the conversion of the inactive state of the enzyme to the active form. UV-vis spectroscopic analysis reveals that ObiH catalyzes the retro-aldol cleavage of l-threonine to form a remarkably persistent glycyl quinonoid intermediate, with a half-life of ∼3 h. Protonation of this intermediate is kinetically disfavored, enabling on-cycle reactivity with aldehydes to form β-hydroxy amino acids. We demonstrate the synthetic potential of ObiH via the single step synthesis of (2 S ,3 R )-β-hydroxyleucine. To further understand the structural features underpinning this desirable reactivity, we determined the crystal structure of ObiH bound to PLP as the Schiff's base at 1.66 Å resolution. This high-resolution model revealed a unique active site configuration wherein the evolutionarily conserved Asp that traditionally H-bonds to the cofactor is swapped for a neighboring Glu. Molecular dynamics simulations combined with mutagenesis studies indicate that a structural rearrangement is associated with l-threonine entry into the catalytic cycle. Together, these data explain the basis for the unique reactivity of lTTA enzymes and provide a foundation for future engineering and mechanistic analysis.
- Subjects :
- Amino Acid Sequence
Amino Acids chemistry
Catalysis
Catalytic Domain
Crystallization
Crystallography, X-Ray
Kinetics
Light
Molecular Dynamics Simulation
Protein Conformation
Pyridoxal Phosphate chemistry
Quinones chemistry
Spectrophotometry, Ultraviolet
Glycine Hydroxymethyltransferase metabolism
Threonine chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 1554-8937
- Volume :
- 16
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- ACS chemical biology
- Publication Type :
- Academic Journal
- Accession number :
- 33337128
- Full Text :
- https://doi.org/10.1021/acschembio.0c00753