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Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank.

Authors :
Alekseyenko AV
Hamidi B
Faith TD
Crandall KA
Powers JG
Metts CL
Madory JE
Carroll SL
Obeid JS
Lenert LA
Source :
Journal of the American Medical Informatics Association : JAMIA [J Am Med Inform Assoc] 2021 Jan 15; Vol. 28 (1), pp. 138-143.
Publication Year :
2021

Abstract

The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine specimens. The LBB is a system-of-systems integrating research feasibility databases in i2b2, a real-time clinical data warehouse, and an informatics system for institutional research services management (SPARC). LBB delivers deidentified clinical data and laboratory specimens. We further present an extension to our solution, the Living µBiome Bank, that allows the user to request and receive phenotyped specimen microbiome data. We discuss the details of the implementation of the LBB system and the necessary regulatory oversight for this solution. The conducted institutional focus group of translational investigators indicates an overall positive sentiment towards potential scientific results generated with the use of LBB. Reference implementation of LBB is available at https://LivingBioBank.musc.edu.<br /> (© The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association.)

Details

Language :
English
ISSN :
1527-974X
Volume :
28
Issue :
1
Database :
MEDLINE
Journal :
Journal of the American Medical Informatics Association : JAMIA
Publication Type :
Academic Journal
Accession number :
33166379
Full Text :
https://doi.org/10.1093/jamia/ocaa236