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Tenacibaculum piscium sp. nov., isolated from skin ulcers of sea-farmed fish, and description of Tenacibaculum finnmarkense sp. nov. with subdivision into genomovars finnmarkense and ulcerans .
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Dec; Vol. 70 (12), pp. 6079-6090. - Publication Year :
- 2020
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Abstract
- Results of previous multilocus sequence and whole-genome-based analyses have suggested that a homogeneous group of isolates belonging to the genus Tenacibaculum , represented by strain TNO020 <superscript>T</superscript> and associated with skin ulcer development in sea-farmed fish, represents an as-yet-undescribed species. Comparative whole-genome analysis performed in the present study clustered five isolates, including TNO020 <superscript>T</superscript> , in a distinct lineage within the genus Tenacibaculum . Phenotypic differences, high intra-cluster average nucleotide identity (ANI) values and low ANI values with other Tenacibaculum species support the proposal of a novel species, for which we propose the name Tenacibaculum piscium sp. nov. with strain TNO020 <superscript>T</superscript> (=CCUG 73833 <superscript>T</superscript> =NCIMB 15240 <superscript>T</superscript> ) as the type strain. Further, large-scale genome analyses confirmed the existence of two different phylogenetic lineages within ' T. finnmarkense ', a species effectively but not validly published previously. ANI values just above the species delineation threshold of 95-96 % confirmed that both lineages belong to the same species. This result was also supported by DNA-DNA hybridization values. Phenotypically, the two conspecific lineages are distinguishable by differences in growth temperature range and ability to degrade l-proline. For the group of isolates already commonly known as ' T. finnmarkense ', we propose the name Tenacibaculum finnmarkense sp. nov., with strain TNO006 <superscript>T</superscript> (=CCUG 73831 <superscript>T</superscript> =NCIMB 15238 <superscript>T</superscript> ) as the type strain. We further propose the subdivision of T. finnmarkense sp. nov. into two genomovars, T. finnmarkense genomovar finnmarkense with strain TNO006 <superscript>T</superscript> (=CCUG 73831 <superscript>T</superscript> =NCIMB 15238 <superscript>T</superscript> ) as the type strain and T. finnmarkense genomovar ulcerans with strain TNO010 <superscript>T</superscript> (=CCUG 73832 <superscript>T</superscript> =NCIMB 15239 <superscript>T</superscript> ) as the type strain.
- Subjects :
- Animals
Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Norway
Nucleic Acid Hybridization
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Tenacibaculum isolation & purification
Whole Genome Sequencing
Fish Diseases microbiology
Fishes microbiology
Phylogeny
Skin Ulcer microbiology
Tenacibaculum classification
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 33079030
- Full Text :
- https://doi.org/10.1099/ijsem.0.004501