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Pelagovum pacificum gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from surface seawater of the Mariana Trench.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Dec; Vol. 70 (12), pp. 6155-6162. - Publication Year :
- 2020
-
Abstract
- A Gram-stain-negative, aerobic, ovoid-rod-shaped bacterium, designated strain SM1903 <superscript>T</superscript> , was isolated from surface seawater of the Mariana Trench. The strain grew at 15-37 °C (optimum, 35 °C) and with 1-15 % (optimum, 4 %) NaCl. It hydrolysed aesculin but did not reduce nitrate to nitrite and hydrolyse Tween 80. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain SM1903 <superscript>T</superscript> formed a separate lineage within the family Rhodobacteraceae , sharing the highest 16S rRNA gene sequence similarity with type strains of Pseudooceanicola antarcticus (95.7 %) and Roseisalinus antarcticus (95.7 %). In phylogenetic trees based on single-copy OCs and whole proteins sequences, strain SM1903 <superscript>T</superscript> fell within a sub-cluster encompassed by Oceanicola granulosus , Roseisalinus antarcticus and Histidinibacterium lentulum and formed a branch adjacent to Oceanicola granulosus . The major cellular fatty acids were summed feature 8 (C <subscript>18 : 1</subscript> ω 7 c and/or C <subscript>18 : 1</subscript> ω 6 c ), C <subscript>16 : 0</subscript> and 11-methyl-C <subscript>18 : 1</subscript> ω 7 c . The polar lipids mainly comprised phosphatidylglycerol, phosphatidylcholine, one unidentified lipid, one unidentified aminolipid, and one unidentified glycolipid. The solo respiratory quinone was ubiquinone-10. The genomic DNA G+C content of strain SM1903 <superscript>T</superscript> was 66.0 mol%. Based on the results of phenotypic, chemotaxonomic, and phylogenetic characterization for strain SM1903 <superscript>T</superscript> , it is considered to represent a novel species of a novel genus in the family Rhodobacteraceae , for which the name Pelagovum pacificum gen. nov., sp. nov. is proposed. The type strain is SM1903 <superscript>T</superscript> (=MCCC 1K03608 <superscript>T</superscript> =KCTC 72046 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Pacific Ocean
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Rhodobacteraceae isolation & purification
Sequence Analysis, DNA
Ubiquinone analogs & derivatives
Ubiquinone chemistry
Phylogeny
Rhodobacteraceae classification
Seawater microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 33052807
- Full Text :
- https://doi.org/10.1099/ijsem.0.004512