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Pelagovum pacificum gen. nov., sp. nov., a novel member of the family Rhodobacteraceae isolated from surface seawater of the Mariana Trench.

Authors :
Ren XB
Cha QQ
Guo XH
He XY
Su HN
Qin QL
Song XY
Chen XL
Zhang YZ
Xu F
Zhang XY
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Dec; Vol. 70 (12), pp. 6155-6162.
Publication Year :
2020

Abstract

A Gram-stain-negative, aerobic, ovoid-rod-shaped bacterium, designated strain SM1903 <superscript>T</superscript> , was isolated from surface seawater of the Mariana Trench. The strain grew at 15-37 °C (optimum, 35 °C) and with 1-15 % (optimum, 4 %) NaCl. It hydrolysed aesculin but did not reduce nitrate to nitrite and hydrolyse Tween 80. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain SM1903 <superscript>T</superscript> formed a separate lineage within the family Rhodobacteraceae , sharing the highest 16S rRNA gene sequence similarity with type strains of Pseudooceanicola antarcticus (95.7 %) and Roseisalinus antarcticus (95.7 %). In phylogenetic trees based on single-copy OCs and whole proteins sequences, strain SM1903 <superscript>T</superscript> fell within a sub-cluster encompassed by Oceanicola granulosus , Roseisalinus antarcticus and Histidinibacterium lentulum and formed a branch adjacent to Oceanicola granulosus . The major cellular fatty acids were summed feature 8 (C <subscript>18 : 1</subscript>  ω 7 c and/or C <subscript>18 : 1</subscript>  ω 6 c ), C <subscript>16 : 0</subscript> and 11-methyl-C <subscript>18 : 1</subscript>  ω 7 c . The polar lipids mainly comprised phosphatidylglycerol, phosphatidylcholine, one unidentified lipid, one unidentified aminolipid, and one unidentified glycolipid. The solo respiratory quinone was ubiquinone-10. The genomic DNA G+C content of strain SM1903 <superscript>T</superscript> was 66.0 mol%. Based on the results of phenotypic, chemotaxonomic, and phylogenetic characterization for strain SM1903 <superscript>T</superscript> , it is considered to represent a novel species of a novel genus in the family Rhodobacteraceae , for which the name Pelagovum pacificum gen. nov., sp. nov. is proposed. The type strain is SM1903 <superscript>T</superscript> (=MCCC 1K03608 <superscript>T</superscript> =KCTC 72046 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
12
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
33052807
Full Text :
https://doi.org/10.1099/ijsem.0.004512