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Novosphingobium ovatum sp. nov., isolated from a freshwater mesocosm.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Oct; Vol. 70 (10), pp. 5243-5254. Date of Electronic Publication: 2020 Sep 04. - Publication Year :
- 2020
-
Abstract
- A bacterial strain, designated FSY-8 <superscript>T</superscript> , was isolated from a freshwater mesocosm in Taiwan and characterized using the polyphasic taxonomy approach. Cells of strain FSY-8 <superscript>T</superscript> were aerobic, Gram-stain-negative, rod-shaped, non-motile and formed yellow coloured colonies on Reasoner's 2A agar. Growth occurred at 20-40 °C (optimum, 30-37 °C) and pH 5-7 (optimum, pH 6) and in the presence of 0-0.5 % NaCl (optimum, 0 %, w/v). The major fatty acids (>10 %) of strain FSY-8 <superscript>T</superscript> were summed feature 8 (C <subscript>18 : 1</subscript> ω 7 c and/or C <subscript>18 : 1</subscript> ω 6 c ) and summed feature 3 (C <subscript>16 : 1</subscript> ω 7 c and/or C <subscript>16 : 1</subscript> ω 6 c ). The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, phosphatidylmonomethylethanolamine, phosphatidyldimethylethanolamine, sphingoglycolipid, diphosphatidylglycerol, an uncharacterized aminophospholipid, an uncharacterized glycolipid and an uncharacterized lipid. The major polyamine was spermidine. The major isoprenoid quinone was Q-10. The DNA G+C content was 64.8 mol %. Phylogenetic analyses based on 16S rRNA gene sequences and coding sequences of 92 protein clusters indicated that strain FSY-8 <superscript>T</superscript> formed a phylogenetic lineage in the genus Novosphingobium . Strain FSY-8 <superscript>T</superscript> showed 71.6-77.2 % average nucleotide identity and 19.9-22.8 % digital DNA-DNA hybridization identity with the strains of other Novosphingobium species. On the basis of phenotypic and genotypic properties and phylogenetic inference, strain FSY-8 <superscript>T</superscript> should be classified in a novel species of the genus Novosphingobium , for which the name Novosphingobium ovatum sp. nov. is proposed. The type strain is FSY-8 <superscript>T</superscript> (=BCRC 81051 <superscript>T</superscript> =LMG 30053 <superscript>T</superscript> =KCTC 52812 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Nucleic Acid Hybridization
Phospholipids chemistry
Pigmentation
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Spermidine chemistry
Sphingomonadaceae isolation & purification
Taiwan
Ubiquinone analogs & derivatives
Ubiquinone chemistry
Fresh Water microbiology
Phylogeny
Sphingomonadaceae classification
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 10
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 32886598
- Full Text :
- https://doi.org/10.1099/ijsem.0.004402