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Description of Massilia rubra sp. nov., Massilia aquatica sp. nov., Massilia mucilaginosa sp. nov., Massilia frigida sp. nov., and one Massilia genomospecies isolated from Antarctic streams, lakes and regoliths.
- Source :
-
Systematic and applied microbiology [Syst Appl Microbiol] 2020 Sep; Vol. 43 (5), pp. 126112. Date of Electronic Publication: 2020 Jul 08. - Publication Year :
- 2020
-
Abstract
- Bacteria of the genus Massilia often colonize extreme ecosystems, however, a detailed study of the massilias from the Antarctic environment has not yet been performed. Here, sixty-four Gram-stain-negative, aerobic, motile rods isolated from different environmental samples on James Ross Island (Antarctica) were subjected to a polyphasic taxonomic study. The psychrophilic isolates exhibited slowly growing, moderately slimy colonies revealing bold pink-red pigmentation on R2A agar. The set of strains exhibited the highest 16S rRNA gene sequence similarities (99.5-99.9%) to Massilia violaceinigra B2 <superscript>T</superscript> and Massilia atriviolacea SOD <superscript>T</superscript> and formed several phylogenetic groups based on the analysis of gyrB and lepA genes. Phenotypic characteristics allowed four of them to be distinguished from each other and from their closest relatives. Compared to the nearest phylogenetic neighbours the set of six genome-sequenced representatives exhibited considerable phylogenetic distance at the whole-genome level. Bioinformatic analysis of the genomic sequences revealed a high number of putative genes involved in oxidative stress response, heavy-metal resistance, bacteriocin production, the presence of putative genes involved in nitrogen metabolism and auxin biosynthesis. The identification of putative genes encoding aromatic dioxygenases suggests the biotechnology potential of the strains. Based on these results four novel species and one genomospecies of the genus Massilia are described and named Massilia rubra sp. nov. (P3094 <superscript>T</superscript> =CCM 8692 <superscript>T</superscript> =LMG 31213 <superscript>T</superscript> ), Massilia aquatica sp. nov. (P3165 <superscript>T</superscript> =CCM 8693 <superscript>T</superscript> =LMG 31211 <superscript>T</superscript> ), Massilia mucilaginosa sp. nov. (P5902 <superscript>T</superscript> =CCM 8733 <superscript>T</superscript> =LMG 31210 <superscript>T</superscript> ), and Massilia frigida sp. nov. (P5534 <superscript>T</superscript> =CCM 8695 <superscript>T</superscript> =LMG 31212 <superscript>T</superscript> ).<br /> (Copyright © 2020 Elsevier GmbH. All rights reserved.)
- Subjects :
- Antarctic Regions
Bacterial Typing Techniques
DNA, Bacterial genetics
Genes, Bacterial
Genes, rRNA
Genome, Bacterial
Oxalobacteraceae genetics
Oxalobacteraceae physiology
Phenotype
Phylogeny
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Geologic Sediments microbiology
Lakes microbiology
Oxalobacteraceae classification
Oxalobacteraceae isolation & purification
Rivers microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1618-0984
- Volume :
- 43
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Systematic and applied microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 32847787
- Full Text :
- https://doi.org/10.1016/j.syapm.2020.126112