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Hansschlegelia quercus sp. nov., a novel methylotrophic bacterium isolated from oak buds.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Aug; Vol. 70 (8), pp. 4646-4652. Date of Electronic Publication: 2020 Jul 15. - Publication Year :
- 2020
-
Abstract
- Novel aerobic, restricted facultatively methylotrophic bacteria were isolated from buds of English oak ( Quercus robur L.; strain Dub <superscript>T</superscript> ) and northern red oak ( Quercus rubra L.; strain KrD). The isolates were Gram-negative, asporogenous, motile short rods that multiplied by binary fisson. They utilized methanol, methylamine and a few polycarbon compounds as carbon and energy sources. Optimal growth occurred at 25 °C and pH 7.5. The dominant phospholipids were phosphatidylethanolamine, phosphatidylcholine, diphosphatidylglycerol and phoshatidylglycerol. The major cellular fatty acids of cells were C <subscript>18 : 1</subscript> ω7 c , 11-methyl C <subscript>18 : 1</subscript> ω7 c and C <subscript>16 : 0</subscript> . The major ubiquinone was Q-10. Analysis of 16S rRNA gene sequences showed that the strains were closely related to the members of the genus Hansschlegelia : Hansschlegelia zhihuaiae S113 <superscript>T</superscript> (97.5-98.0 %), Hansschlegelia plantiphila S1 <superscript>T</superscript> (97.4-97.6 %) and Hansschlegelia beijingensis PG04 <superscript>T</superscript> (97.0-97.2 %). The 16S rRNA gene sequence similarity between strains Dub <superscript>T</superscript> and KrD was 99.7 %, and the DNA-DNA hybridization (DDH) result between the strains was 85 %. The ANI and the DDH values between strain Dub <superscript>T</superscript> and H. zhihuaiae S113 <superscript>T</superscript> were 80.1 and 21.5 %, respectively. Genome sequencing of the strain Dub <superscript>T</superscript> revealed a genome size of 3.57 Mbp and a G+C content of 67.0 mol%. Based on the results of the phenotypic, chemotaxonomic and genotypic analyses, it is proposed that the isolates be assigned to the genus Hansschlegelia as Hansschlegelia quercus sp. nov. with the type strain Dub <superscript>T</superscript> (=VKM B-3284 <superscript>T</superscript> =CCUG 73648 <superscript>T</superscript> =JCM 33463 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Methylocystaceae isolation & purification
Nucleic Acid Hybridization
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Russia
Sequence Analysis, DNA
Ubiquinone analogs & derivatives
Ubiquinone chemistry
Methylocystaceae classification
Phylogeny
Quercus microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 8
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 32667874
- Full Text :
- https://doi.org/10.1099/ijsem.0.004323