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Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.
- Source :
-
Scientific reports [Sci Rep] 2020 Jun 08; Vol. 10 (1), pp. 9179. Date of Electronic Publication: 2020 Jun 08. - Publication Year :
- 2020
-
Abstract
- Increased serum uric acid (SUA) levels cause gout and are associated with multiple diseases, including chronic kidney disease. Previous genome-wide association studies (GWAS) have identified more than 180 loci that contribute to SUA levels. Here, we investigated genetic determinants of SUA level in the Korean population. We conducted a GWAS for SUA in 6,881 Korean individuals, calculated polygenic risk scores (PRSs) for common variants, and validated the association of low-frequency variants and PRS with SUA levels in 3,194 individuals. We identified two low-frequency and six common independent variants associated with SUA. Despite the overall similar effect sizes of variants in Korean and European populations, the proportion of variance for SUA levels explained by the variants was greater in the Korean population. A rare, nonsense variant SLC22A12 p.W258X showed the most significant association with reduced SUA levels, and PRSs of common variants associated with SUA levels were significant in multiple Korean cohorts. Interestingly, an East Asian-specific missense variant (rs671) in ALDH2 displayed a significant association on chromosome 12 with the SUA level. Further genetic epidemiological studies on SUA are needed in ethnically diverse cohorts to investigate rare or low-frequency variants and determine the influence of genetic and environmental factors on SUA.
- Subjects :
- Adult
Aldehyde Dehydrogenase, Mitochondrial genetics
Asian People genetics
Chromosomes, Human, Pair 12 genetics
Female
Genome-Wide Association Study methods
Genotype
Gout blood
Gout genetics
Humans
Hyperuricemia blood
Hyperuricemia genetics
Male
Middle Aged
Organic Anion Transporters genetics
Republic of Korea
Gene Frequency genetics
Polymorphism, Single Nucleotide genetics
Uric Acid blood
Subjects
Details
- Language :
- English
- ISSN :
- 2045-2322
- Volume :
- 10
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Scientific reports
- Publication Type :
- Academic Journal
- Accession number :
- 32514006
- Full Text :
- https://doi.org/10.1038/s41598-020-66064-z