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Corona virus versus existence of human on the earth: A computational and biophysical approach.
- Source :
-
International journal of biological macromolecules [Int J Biol Macromol] 2020 Oct 15; Vol. 161, pp. 271-281. Date of Electronic Publication: 2020 Jun 05. - Publication Year :
- 2020
-
Abstract
- SARS-CoV-2 has a positive sense RNA genome of 29.9 kb in size, showing high sequence similarity to the BAT-CoV, SARS-CoV, MERS-CoV. SARS-CoV-2 is composed of 14 open reading frames (ORFs), which encodes for a total of 27 proteins divided into structural and non-structural proteins (NSPs). The fundamental structural protein-encoding genes are a spike protein (S) gene, envelope protein (E) gene, a membrane protein (M) gene, and a nucleocapsid protein (N) gene. They make about 33% of the entire genome and are vital for the viral life cycle. Rest 67% is distributed among different NSPs (such as M <superscript>pro</superscript> , helicase, and RNA-dependent RNA polymerase) encoding genes across the ORFs, which are involved in virus-cell receptor interactions during viral entry. Researchers are trying to formulate vaccines, therapeutic antibodies or protein-targeted antiviral drugs to control the spread. This review proceeds stepwise through the COVID-19 outbreak, structural and genomic organization, entry mechanism, pathogenesis, and finally highlighting the essential proteins involved at each step that might be potential targets for drug discovery. Currently, approved treatment modalities consist of only supportive care and oxygen supplementation. This review is established on the current knowledge that has expanded on structural motifs and topology of proteins and their functions.<br />Competing Interests: Declaration of competing interest The authors declare no conflict of interest.<br /> (Copyright © 2020. Published by Elsevier B.V.)
- Subjects :
- Antiviral Agents pharmacology
Betacoronavirus drug effects
Betacoronavirus genetics
Betacoronavirus physiology
COVID-19
Coronavirus drug effects
Coronavirus genetics
Coronavirus Infections drug therapy
Coronavirus Infections transmission
Coronavirus Infections virology
Coronavirus Nucleocapsid Proteins
Drug Discovery
Genome, Viral
Humans
Models, Molecular
Nucleocapsid Proteins chemistry
Nucleocapsid Proteins genetics
Open Reading Frames
Pandemics
Phosphoproteins
Pneumonia, Viral drug therapy
Pneumonia, Viral transmission
Pneumonia, Viral virology
Protein Conformation
SARS-CoV-2
Spike Glycoprotein, Coronavirus chemistry
Spike Glycoprotein, Coronavirus genetics
Virus Internalization
Coronavirus physiology
Viral Proteins chemistry
Viral Proteins genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1879-0003
- Volume :
- 161
- Database :
- MEDLINE
- Journal :
- International journal of biological macromolecules
- Publication Type :
- Academic Journal
- Accession number :
- 32512089
- Full Text :
- https://doi.org/10.1016/j.ijbiomac.2020.06.007