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Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans.

Authors :
Tran TLQ
Anani H
Trinh HT
Pham TPT
Dang VK
Ho VM
Bui NHL
Nguyen NH
Raoult D
Trinh TT
Fournier PE
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Mar; Vol. 70 (3), pp. 1758-1768.
Publication Year :
2020

Abstract

We describe a new multidrug resistant Chitinophaga species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01 <superscript>T</superscript> was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with Chitinophaga polysaccharea MRP-15 <superscript>T</superscript> of 97.42 %. Their predominant fatty acid is iso-C <subscript>15 : 0</subscript> (73.8 % for strain BD 01 <superscript>T</superscript> and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01 <superscript>T</superscript> and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01 <superscript>T</superscript> (=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name Chitinophaga vietnamensis sp. nov. Strain BD 01 <superscript>T</superscript> was chosen as type strain of C. vietnamensis sp. nov.

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
3
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
32228771
Full Text :
https://doi.org/10.1099/ijsem.0.003968