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Chitinophaga vietnamensis sp. nov. , a multi-drug resistant bacterium infecting humans.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Mar; Vol. 70 (3), pp. 1758-1768. - Publication Year :
- 2020
-
Abstract
- We describe a new multidrug resistant Chitinophaga species that was isolated from patients with type 2 diabetes in Vietnam. Strain BD 01 <superscript>T</superscript> was cultivated in 2017 from a blood sample of a patient suffering from bacteremia. Strain VP 7442 was isolated in 2018 from a pleural fluid sample of a patient who had presented with lung abscess and pleural effusion. Both strains are aerobic, Gram-negative, non-motile and non-spore-forming. The 16S rRNA gene sequences of both strains are 100 % similar and share a highest 16S sequence identity with Chitinophaga polysaccharea MRP-15 <superscript>T</superscript> of 97.42 %. Their predominant fatty acid is iso-C <subscript>15 : 0</subscript> (73.8 % for strain BD 01 <superscript>T</superscript> and 79.8 % for strain VP 7442). The draft genome sizes of strains BD 01 <superscript>T</superscript> and VP 7442 are 6 308 408 and 6 308 579 bp, respectively. They are resistant to beta-lactams, aminoglycosides, fluoroquinolones, metronidazole, fosfomycin, vancomycin and macrolides, and exhibit 20 and 18 antimicrobial resistance-related genes, respectively. Using the multiphasic taxonogenomic approach, we propose that strains BD 01 <superscript>T</superscript> (=CSUR P9622=VTCC 70981) and VP 7442 (=CSUR P9623=VTCC 70982) represent a new species, for which we propose the name Chitinophaga vietnamensis sp. nov. Strain BD 01 <superscript>T</superscript> was chosen as type strain of C. vietnamensis sp. nov.
- Subjects :
- Bacteremia
Bacterial Typing Techniques
Bacteroidetes isolation & purification
Base Composition
DNA, Bacterial genetics
Diabetes Mellitus, Type 2
Fatty Acids chemistry
Humans
Lung Abscess microbiology
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Vietnam
Bacteroidetes classification
Drug Resistance, Multiple, Bacterial
Phylogeny
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 32228771
- Full Text :
- https://doi.org/10.1099/ijsem.0.003968