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Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

Authors :
Papoutsoglou EA
Faria D
Arend D
Arnaud E
Athanasiadis IN
Chaves I
Coppens F
Cornut G
Costa BV
Ćwiek-Kupczyńska H
Droesbeke B
Finkers R
Gruden K
Junker A
King GJ
Krajewski P
Lange M
Laporte MA
Michotey C
Oppermann M
Ostler R
Poorter H
Ramı Rez-Gonzalez R
Ramšak Ž
Reif JC
Rocca-Serra P
Sansone SA
Scholz U
Tardieu F
Uauy C
Usadel B
Visser RGF
Weise S
Kersey PJ
Miguel CM
Adam-Blondon AF
Pommier C
Source :
The New phytologist [New Phytol] 2020 Jul; Vol. 227 (1), pp. 260-273. Date of Electronic Publication: 2020 Apr 25.
Publication Year :
2020

Abstract

Enabling data reuse and knowledge discovery is increasingly critical in modern science, and requires an effort towards standardising data publication practices. This is particularly challenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standard in coverage, to support perennial plants, in structure, through an explicit data model, and in clarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping experiments in a range of different formats, to demonstrate its applicability and the interoperability between the various implementations. Furthermore, the extended coverage is demonstrated by the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability, thanks to its extended coverage, and especially the formalisation of its data model, which facilitates its implementation in different formats. Community feedback has been critical to this development, and will be a key part of ensuring adoption of the standard.<br /> (© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust.)

Subjects

Subjects :
Phenomics
Plants genetics

Details

Language :
English
ISSN :
1469-8137
Volume :
227
Issue :
1
Database :
MEDLINE
Journal :
The New phytologist
Publication Type :
Academic Journal
Accession number :
32171029
Full Text :
https://doi.org/10.1111/nph.16544