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Yersinia canariae sp. nov., isolated from a human yersiniosis case.

Authors :
Nguyen SV
Greig DR
Hurley D
Donoghue O
Cao Y
McCabe E
Mitchell M
Schaffer K
Jenkins C
Fanning S
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Apr; Vol. 70 (4), pp. 2382-2387. Date of Electronic Publication: 2020 Mar 11.
Publication Year :
2020

Abstract

A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia , despite biochemical similarities to Yersinia enterocolitica . The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is SRR7544370 <superscript>T</superscript> (=NCTC 14382 <superscript>T</superscript> /=LMG 31573 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
4
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
32160143
Full Text :
https://doi.org/10.1099/ijsem.0.004047