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Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study.
- Source :
-
Scientific reports [Sci Rep] 2020 Jan 14; Vol. 10 (1), pp. 221. Date of Electronic Publication: 2020 Jan 14. - Publication Year :
- 2020
-
Abstract
- Primary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called 'normal-tension glaucoma [NTG]') is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare variants associated with POAG from the primary cohort (309 POAG patients and 5,400 control, all Koreans). For replication, Korean (310 POAG patients and 5,612 controls) and Japanese (565 POAG patients and 1,104 controls) cohorts were further investigated by targeted genotyping. SNP rs116121322 in LRRC27 showed nominally significant association with POAG in the discovery cohort (OR = 29.85, P = 2E-06). This SNP was validated in the Korean replication cohort but only in the NTG subgroups (OR = 9.86, P = 0.007). Japanese replication cohort did not show significant association with POAG (P .00.44). However, the meta-analysis in the entire cohort revealed significant association of rs116121322 with POAG (OR <subscript>combined</subscript> = 10.28, P <subscript>combined</subscript> = 1.4E-07). The LRRC27 protein expression was confirmed from human trabecular meshwork cells. For gene-based testing, METTL20 showed a significant association in POAG (P <subscript>combined</subscript> = 0.002) and in the subgroup of NTG (P <subscript>combined</subscript> = 0.02), whereas ZNF677 were significantly associated with only in the subgroup of high-tension glaucoma (P <subscript>combined</subscript> = 1.5E-06). Our findings may provide further genetic backgrounds into the pathogenesis of POAG, especially for the patients who have lower baseline intraocular pressures.
- Subjects :
- Case-Control Studies
Asia, Eastern epidemiology
Female
Follow-Up Studies
Genotype
Humans
Male
Middle Aged
Nuclear Proteins metabolism
Prognosis
Prospective Studies
Biomarkers analysis
Genetic Predisposition to Disease
Glaucoma, Open-Angle epidemiology
Glaucoma, Open-Angle genetics
Nuclear Proteins genetics
Polymorphism, Single Nucleotide
Subjects
Details
- Language :
- English
- ISSN :
- 2045-2322
- Volume :
- 10
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Scientific reports
- Publication Type :
- Academic Journal
- Accession number :
- 31937794
- Full Text :
- https://doi.org/10.1038/s41598-019-57066-7