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Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.
Muricauda alvinocaridis sp. nov., isolated from shrimp gill from the Okinawa Trough.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Mar; Vol. 70 (3), pp. 1666-1671. Date of Electronic Publication: 2020 Jan 07. - Publication Year :
- 2020
-
Abstract
- A Gram-stain-negative, strictly aerobic, non-motile, long, straight-rod and non-flagellated marine bacterium strain, designated SCR12 <superscript>T</superscript> , was isolated from the gill of a shrimp collected in the Tangyin hydrothermal field of the Okinawa Trough. The growth temperature was in the range of 16-40 °C and the optimum temperature was 37 °C. Optimal growth occurred at pH 6.5 and in the presence of 3 % (w/v) NaCl. The predominant isoprenoid quinone of strain SCR12 <superscript>T</superscript> was menaquinone-6 (MK-6). The predominant fatty acids (>10 %) were iso-C <subscript>15 : 0</subscript> (44.2 %), iso-C <subscript>15 : 1</subscript> G (19.0 %) and iso-C <subscript>17 : 0</subscript> 3-OH (12.1 %). The major polar lipids comprised one phosphatidylethanolamine, three unidentified phospholipids, two unidentified aminolipids and three unidentified lipids. Based on the results of 16S rRNA gene sequence analysis, strain SCR12 <superscript>T</superscript> was found to be most closely related to Muricauda olearia CL-SS4 <superscript>T</superscript> (98.09 %), followed by Muricauda beolgyonensis BB-My12 <superscript>T</superscript> (97.65 %), Muricauda aquimarina SW-63 <superscript>T</superscript> (97.58 %) and Muricauda ruestringensis DSM 13258 <superscript>T</superscript> (97.31 %) and with lower sequence similarities (95.74-97.10 %) to other species of the genus Muricauda . Genome relatedness between strain SCR12 <superscript>T</superscript> and M. olearia CL-SS4 <superscript>T</superscript> was computed using both average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) and resulted in values of 85.6 % and 29.3±2.3 %, respectively. The genomic DNA G+C content of strain SCR12 <superscript>T</superscript> was 42.3 mol%. On the basis of polyphasic analysis, the strain SCR12 <superscript>T</superscript> was considered to represent a novel species of the genus Muricauda, for which the name Muricauda alvinocaridis sp. nov. is proposed. The type strain is SCR12 <superscript>T</superscript> (=MCCC 1K03731 <superscript>T</superscript> =JCM 33425 <superscript>T</superscript> ).
- Subjects :
- Animals
Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Flavobacteriaceae isolation & purification
Nucleic Acid Hybridization
Pacific Ocean
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Seawater microbiology
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Decapoda microbiology
Flavobacteriaceae classification
Gills microbiology
Phylogeny
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31909707
- Full Text :
- https://doi.org/10.1099/ijsem.0.003953