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Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis .
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Feb; Vol. 70 (2), pp. 1259-1265. - Publication Year :
- 2020
-
Abstract
- An actinobacterial strain, designated FW100M-8 <superscript>T</superscript> , was isolated from a gut sample of larva of Protaetia brevitarsis seulensis at the National Institute of Agricultural Sciences, Wanju-gun, South Korea. Cells were Gram-stain-positive, microaerophilic to aerobic, non-spore forming and non-motile. It grew at pH 7.0-9.0 (optimum, pH 8.0), at 15-35 °C (optimum, 28 °C) and 0-3.0 % (w/v) NaCl (optimum, 0 %). According to the 16S rRNA gene analysis, strain FW100M-8 <superscript>T</superscript> shared the highest sequence similarity with Agromyces mediolanus DSM 20152 <superscript>T</superscript> (98.4 %), Agromyces ulmi XIL01 <superscript>T</superscript> (98.3 %), Agromyces indicus NIO-1018 <superscript>T</superscript> (98.3 %), Agromyces soli MJ21 <superscript>T</superscript> (98.3 %), and Agromyces arachidis AK-1 <superscript>T</superscript> (97.9 %). Phylogenetic trees showed that strain FW100M-8 <superscript>T</superscript> fell into the lineage of the genus Agromyces . The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, an unidentified glycolipid and an unidentified lipid. The menaquinones of strain FW100M-8 <superscript>T</superscript> were MK-12 (46 %), MK-11 (36 %), MK-10 (14 %) and MK-13 (4 %). The major fatty acids were anteiso-C <subscript>15 : 0</subscript> , anteiso-C <subscript>17 : 0</subscript> and iso-C <subscript>16 : 0</subscript> . The peptidoglycan type was supposed to be the type B1, comprising d-Ala, d-Glu, Gly and l-A <subscript>2</subscript> bu. The G+C content of the genomic DNA is 70.5 mol%. On the basis of the genotypic and phenotypic data, we conclude that strain FW100M-8 <superscript>T</superscript> represents a novel species of the genus Agromyces , for which the name Agromyces protaetiae sp. nov. is proposed with strain FW100M-8 <superscript>T</superscript> (=KACC 19308 <superscript>T</superscript> =NBRC 113048 <superscript>T</superscript> ) as the type strain.
- Subjects :
- Actinobacteria isolation & purification
Animals
Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Glycolipids chemistry
Larva microbiology
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Sequence Analysis, DNA
Vitamin K 2 chemistry
Actinobacteria classification
Coleoptera microbiology
Gastrointestinal Tract microbiology
Phylogeny
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31851604
- Full Text :
- https://doi.org/10.1099/ijsem.0.003908