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Comparative antiradical activity and molecular Docking/Dynamics analysis of octopamine and norepinephrine: the role of OH groups.
- Source :
-
Computational biology and chemistry [Comput Biol Chem] 2020 Feb; Vol. 84, pp. 107170. Date of Electronic Publication: 2019 Nov 21. - Publication Year :
- 2020
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Abstract
- Octopamine is a neurotransmitter in invertebrates and a phenol analog of norepinephrine. The crystallographic and spectral (UV-visUV, and NMR) characteristics of octopamine were investigated experimentally and theoretically by applying appropriate level of theory, B3LYP-D3BJ/6-311++G(d,p), which reproduced well the experimental bond lengths and angles. The intramolecular interactions governing the stability of conformers were described by NBO and QTAIM analyses. The antiradical potencies of octopamine and norepinephrine towards DPPH and ABTS <superscript>+</superscript> were examined with special emphasis on the preferred mechanism and effect of catechol moiety. Several techniques were used to distinguish Hydrogen Atom Transfer (HAT) and Proton Coupled Electron Transfer (PCET) mechanisms for reaction with DPPH. The calculated rate constants of the reactions with both radicals showed that Sequential Proton Loss Electron Transfer (SPLET) mechanism was dominant both thermodynamically and kinetically, with values of thermodynamic functions and rate constants clearly proving the importance of the second hydroxyl group in structure. The Molecular Docking and afterward Molecular Dynamics calculations of formed complexes between octopamine/norepinephrine with β1- and β2- adrenergic receptors examined in details the interactions that lead to the formation of stable complexes. The number of strong interactions of amino acids with norepinephrine was higher, but the absence of hydroxyl group in octopamine did not lead to a significant change in the type of interactions and stability. The formed complexes showed higher flexibility of amino acids, similar compactness of structure as proteins and increased interatomic distances of the backbone when compared to pure proteins.<br />Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.<br /> (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Subjects :
- Animals
Camelids, New World
Free Radical Scavengers metabolism
Molecular Docking Simulation
Molecular Dynamics Simulation
Molecular Structure
Neurotransmitter Agents metabolism
Norepinephrine metabolism
Octopamine metabolism
Receptors, Adrenergic, beta-1 metabolism
Receptors, Adrenergic, beta-2 metabolism
Turkeys
Free Radical Scavengers chemistry
Neurotransmitter Agents chemistry
Norepinephrine chemistry
Octopamine chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 1476-928X
- Volume :
- 84
- Database :
- MEDLINE
- Journal :
- Computational biology and chemistry
- Publication Type :
- Academic Journal
- Accession number :
- 31810852
- Full Text :
- https://doi.org/10.1016/j.compbiolchem.2019.107170