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Cumulibacter soli sp. nov., isolated from farmland soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Feb; Vol. 70 (2), pp. 1152-1157. - Publication Year :
- 2020
-
Abstract
- A Gram-stain-positive, strictly aerobic, non-motile, non-spore-forming and rod-shaped bacterium, designated as strain G-1 <superscript>T</superscript> , was isolated from farmland soil sampled in in Fuyang, Anhui Province, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain G-1 <superscript>T</superscript> was closely related to Cumulibacter manganitolerans 2-36 <superscript>T</superscript> (97.7 % similarity). Strain G-1 <superscript>T</superscript> contained iso-C <subscript>16 : 0</subscript> , C <subscript>17 : 1</subscript> ω6 c , iso-C <subscript>15 : 0</subscript> and iso-C <subscript>14 : 0</subscript> as the predominant fatty acids. The polar lipids of strain G-1 <superscript>T</superscript> were diphosphatidylglycerol, phosphatidylethanolamine, an unidentified phospholipid, an unidentified lipid and two unidentified glycolipids. The predominant respiratory quinone of strain G-1 <superscript>T</superscript> was MK-9(H <subscript>4</subscript> ). The cell wall contained meso -diaminopimelic acid as the diagnostic diamino acid. The G+C content of the genomic DNA based on genome calculations was 64.2 mol%. Average nucleotide identity and the digital DNA-DNA hybridization values for the draft genomes between strain G-1 <superscript>T</superscript> and strain 2-36 <superscript>T</superscript> were 75.7 and 20.2 %, respectively. On the basis of phenotypic and phylogenetic data, strain G-1 <superscript>T</superscript> is considered to represent a novel species of the genus Cumulibacter , for which the name Cumulibacter soli sp. nov. is proposed. The type strain is G-1 <superscript>T</superscript> (=CCTCC AB2019021 <superscript>T</superscript> =KCTC 49258 <superscript>T</superscript> ).
- Subjects :
- Actinobacteria isolation & purification
Bacterial Typing Techniques
Base Composition
China
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Glycolipids chemistry
Nucleic Acid Hybridization
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Actinobacteria classification
Farms
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31800385
- Full Text :
- https://doi.org/10.1099/ijsem.0.003893