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Lysobacter terrigena sp. nov., isolated from a Korean soil sample.
- Source :
-
Archives of microbiology [Arch Microbiol] 2020 Apr; Vol. 202 (3), pp. 637-643. Date of Electronic Publication: 2019 Nov 27. - Publication Year :
- 2020
-
Abstract
- A bacterial strain isolated from a soil collected in Jeju Island, designated as 17J7-1 <superscript>T</superscript> , was Gram-negative, rod-shaped, yellow colored, and motile by gliding. This strain was able to grow at temperature range from 10 to 42 °C, pH 7-9, and tolerated up to 1% NaCl. Analysis of 16S rRNA sequence identified strain 17J7-1 <superscript>T</superscript> as a member of the genus Lysobacter with close sequence similarity with Lysobacter mobilis 9NM-14 <superscript>T</superscript> (97.4%), Lysobacter xinjiangensis RCML-52 <superscript>T</superscript> (97.0%), and Lysobacter humi FJY8 <superscript>T</superscript> (96.9%). The genomic DNA G + C content of the isolate was 67.9 mol%. DNA-DNA relatedness between strain 17J7-1 <superscript>T</superscript> and L. mobilis, L. humi, and L. xinjiangensis were 42.3%, 39.5%, and 35.8%, respectively, clearly showing that the isolate is distinct from its closest phylogenetic neighbors in the genus Lysobacter. Average nucleotide identity (ANI) and digital DNA-DNAhybridization (dDDH) values between strain 17J7-1 <superscript>T</superscript> and L. enzymogenes ATCC 29487 <superscript>T</superscript> , the type species of this genus, and several other close Lysobacter species were less than 77% and 22%, respectively. Major fatty acids were C <subscript>16:0</subscript> iso (29.8%), summed feature 9 (C <subscript>17:1</subscript> iso ω9c/C <subscript>16:0</subscript> 10-methyl; 20.1%), and C <subscript>15:0</subscript> iso (17.7%). The predominant respiratory quinone was ubiquinone Q-8 and the major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. In the light of the polyphasic evidence accumulated in this study, strain 17J7-1 <superscript>T</superscript> is considered to represent a novel species in the genus Lysobacter, for which name Lysobacter terrigena sp. nov. is proposed. The type strain is 17J7-1 <superscript>T</superscript> (= KCTC 62217 <superscript>T</superscript> = JCM 33057 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids analysis
Fatty Acids metabolism
Lysobacter classification
Lysobacter genetics
Lysobacter metabolism
Phospholipids analysis
Phospholipids metabolism
Phylogeny
RNA, Ribosomal, 16S genetics
Republic of Korea
Sequence Analysis, DNA
Lysobacter isolation & purification
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1432-072X
- Volume :
- 202
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- Archives of microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31776587
- Full Text :
- https://doi.org/10.1007/s00203-019-01776-z