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Lysobacter terrigena sp. nov., isolated from a Korean soil sample.

Authors :
Li W
Elderiny NS
Ten LN
Lee SY
Kim MK
Jung HY
Source :
Archives of microbiology [Arch Microbiol] 2020 Apr; Vol. 202 (3), pp. 637-643. Date of Electronic Publication: 2019 Nov 27.
Publication Year :
2020

Abstract

A bacterial strain isolated from a soil collected in Jeju Island, designated as 17J7-1 <superscript>T</superscript> , was Gram-negative, rod-shaped, yellow colored, and motile by gliding. This strain was able to grow at temperature range from 10 to 42 °C, pH 7-9, and tolerated up to 1% NaCl. Analysis of 16S rRNA sequence identified strain 17J7-1 <superscript>T</superscript> as a member of the genus Lysobacter with close sequence similarity with Lysobacter mobilis 9NM-14 <superscript>T</superscript> (97.4%), Lysobacter xinjiangensis RCML-52 <superscript>T</superscript> (97.0%), and Lysobacter humi FJY8 <superscript>T</superscript> (96.9%). The genomic DNA G + C content of the isolate was 67.9 mol%. DNA-DNA relatedness between strain 17J7-1 <superscript>T</superscript> and L. mobilis, L. humi, and L. xinjiangensis were 42.3%, 39.5%, and 35.8%, respectively, clearly showing that the isolate is distinct from its closest phylogenetic neighbors in the genus Lysobacter. Average nucleotide identity (ANI) and digital DNA-DNAhybridization (dDDH) values between strain 17J7-1 <superscript>T</superscript> and L. enzymogenes ATCC 29487 <superscript>T</superscript> , the type species of this genus, and several other close Lysobacter species were less than 77% and 22%, respectively. Major fatty acids were C <subscript>16:0</subscript> iso (29.8%), summed feature 9 (C <subscript>17:1</subscript> iso ω9c/C <subscript>16:0</subscript> 10-methyl; 20.1%), and C <subscript>15:0</subscript> iso (17.7%). The predominant respiratory quinone was ubiquinone Q-8 and the major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol. In the light of the polyphasic evidence accumulated in this study, strain 17J7-1 <superscript>T</superscript> is considered to represent a novel species in the genus Lysobacter, for which name Lysobacter terrigena sp. nov. is proposed. The type strain is 17J7-1 <superscript>T</superscript> (= KCTC 62217 <superscript>T</superscript>  = JCM 33057 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1432-072X
Volume :
202
Issue :
3
Database :
MEDLINE
Journal :
Archives of microbiology
Publication Type :
Academic Journal
Accession number :
31776587
Full Text :
https://doi.org/10.1007/s00203-019-01776-z