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Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil.

Authors :
Heo J
Weon HY
Cho H
Hong SB
Kim JS
Kim SJ
Kwon SW
Source :
Journal of microbiology (Seoul, Korea) [J Microbiol] 2020 Jan; Vol. 58 (1), pp. 17-23. Date of Electronic Publication: 2019 Nov 23.
Publication Year :
2020

Abstract

A bacterial strain designated 5GH32-13 <superscript>T</superscript> was isolated from greenhouse soil in Yongin-city, Republic of Korea. Cells were Gram-stain-negative, strictly aerobic, motile rods of two different shapes. The strain was catalase-positive and oxidasenegative. Flexirubin-like pigments were not detected. β-Carotene was produced. The strain grew in the range of 10-37°C (optimum of 28-30°C) and pH 6-8 (optimum of pH 7) and tolerated up to 1% (w/v) NaCl (optimum of 0%). According to the 16S rRNA gene sequence comparison, strain 5GH32-13 <superscript>T</superscript> shared a sequence similarity of less than 96.0% with all validly named taxa, having the highest sequence similarity with Pseudoflavitalea soli KIS20-3 <superscript>T</superscript> (95.8%), Pseudoflavitalea rhizosphaerae T16R-265 <superscript>T</superscript> (95.4%), Flavitalea gansuensis JCN-23 <superscript>T</superscript> (95.3%), Pseudobacter ginsenosidimutans Gsoil 221 <superscript>T</superscript> (95.3%), and Flavitalea populi HY-50RT (95.2%). A phylogenetic tree showed that strain 5GH32-13 <superscript>T</superscript> was not grouped consistently into any specific genus. Its only polyamine was homospermidine, and its major fatty acids (> 10% of total fatty acids) were iso-C <subscript>15:0</subscript> , iso-C <subscript>17:0</subscript> 3-OH, and iso-C <subscript>15:1</subscript> G. The strain's only respiratory quinone was MK-7, and its polar lipids were phosphatidylethanolamine, one unidentified phospholipid, six unidentified aminolipids and four unidentified lipids. Its DNA G + C content was 47.5 mol%. The results from chemotaxonomic, phenotypic and phylogenetic analyses indicated that strain 5GH32-13 <superscript>T</superscript> represents a novel species of a novel genus of the family Chitinophagaceae, and the name Paraflavitalea soli gen. nov., sp. nov. is proposed. The type strain is 5GH32-13 <superscript>T</superscript> (= KACC 17331 <superscript>T</superscript> = JCM 33061 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1976-3794
Volume :
58
Issue :
1
Database :
MEDLINE
Journal :
Journal of microbiology (Seoul, Korea)
Publication Type :
Academic Journal
Accession number :
31760613
Full Text :
https://doi.org/10.1007/s12275-020-9236-y