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ORCAE-AOCC: A Centralized Portal for the Annotation of African Orphan Crop Genomes.

Authors :
Yssel AEJ
Kao SM
Van de Peer Y
Sterck L
Source :
Genes [Genes (Basel)] 2019 Nov 20; Vol. 10 (12). Date of Electronic Publication: 2019 Nov 20.
Publication Year :
2019

Abstract

ORCAE (Online Resource for Community Annotation of Eukaryotes) is a public genome annotation curation resource. ORCAE-AOCC is a branch that is dedicated to the genomes published as part of the African Orphan Crops Consortium (AOCC). The motivation behind the development of the ORCAE platform was to create a knowledge-based website where the research-community can make contributions to improve genome annotations. All changes to any given gene-model or gene description are stored, and the entire annotation history can be retrieved. Genomes can either be set to "public" or "restricted" mode; anonymous users can browse public genomes but cannot make any changes. Aside from providing a user- friendly interface to view genome annotations, the platform also includes tools and information (such as gene expression evidence) that enables authorized users to edit and validate genome annotations. The ORCAE-AOCC platform will enable various stakeholders from around the world to coordinate their efforts to annotate and study underutilized crops.<br />Competing Interests: The authors declare no conflict of interest.

Details

Language :
English
ISSN :
2073-4425
Volume :
10
Issue :
12
Database :
MEDLINE
Journal :
Genes
Publication Type :
Academic Journal
Accession number :
31757073
Full Text :
https://doi.org/10.3390/genes10120950