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Biochemical characterization and structural analysis of ulvan lyase from marine Alteromonas sp. reveals the basis for its salt tolerance.

Authors :
Qin HM
Gao D
Zhu M
Li C
Zhu Z
Wang H
Liu W
Tanokura M
Lu F
Source :
International journal of biological macromolecules [Int J Biol Macromol] 2020 Mar 15; Vol. 147, pp. 1309-1317. Date of Electronic Publication: 2019 Nov 18.
Publication Year :
2020

Abstract

Marine macroalgae have gained considerable attention as renewable biomass sources. Ulvan is a water-soluble anionic polysaccharide, and its depolymerization into fermentable monosaccharides has great potential for the production of bioethanol or high-value food additives. Ulvan lyase from Alteromonas sp. (AsPL) utilizes a β-elimination mechanism to cleave the glycosidic bond between rhamnose 3-sulfate and glucuronic acid, forming an unsaturated uronic acid at the non-reducing end. AsPL was active in the temperature range of 30-50 °C and pH values ranging from 7.5 to 9.5. Furthermore, AsPL was found to be halophilic, showing high activity and stability in the presence of up to 2.5 M NaCl. The apparent K <subscript>m</subscript> and k <subscript>cat</subscript> values of AsPL are 3.19 ± 0.37 mg mL <superscript>-1</superscript> and 4.19 ± 0.21 s <superscript>-1</superscript> , respectively. Crystal structure analysis revealed that AsPL adopts a β-propeller fold with four anti-parallel β-strands in each of the seven propeller blades. The acid residues at the protein surface and two Ca <superscript>2+</superscript> coordination sites contribute to its salt tolerance. The research on ulvan lyase has potential commercial value in the utilization of algal resources for biofuel production to relieve the environmental burden of petrochemicals.<br />Competing Interests: Declaration of Competing Interest The authors declare no competing financial interests.<br /> (Copyright © 2019 Elsevier B.V. All rights reserved.)

Details

Language :
English
ISSN :
1879-0003
Volume :
147
Database :
MEDLINE
Journal :
International journal of biological macromolecules
Publication Type :
Academic Journal
Accession number :
31751708
Full Text :
https://doi.org/10.1016/j.ijbiomac.2019.10.095