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Paenibacillus piri sp. nov., isolated from urban soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Jan; Vol. 70 (1), pp. 656-661. - Publication Year :
- 2020
-
Abstract
- A rod-shaped, Gram-stain-positive bacterial strain, MS74 <superscript>T</superscript> , was isolated from soil beside Itaewon road, Seoul, Republic of Korea. The strain could grow well on R2A, nutrient agar and tryptone soya agar, but not in LB agar. MS74 <superscript>T</superscript> tolerated 3.0 % NaCl (w/v), pH 9.0 and a temperature range from 10 to 35 °C (optimal temperature, 28 °C). From the comparison of 16S rRNA gene sequence, the strain is most closely related to Paenibacillus vulneris CCUG 53270 <superscript>T</superscript> , Paenibacillus esterisolvens CFH S0170 <superscript>T</superscript> , Paenibacillus rigui JCM 16352 <superscript>T</superscript> and Paenibacillus yunnanensis YN2 <superscript>T</superscript> with similarity percentages of 96.6 %, 96.4 %, 95.9 % and 95.8 % respectively. Major polar lipids were diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and phosphatidylethanolamine (PE). The major menaquinone was MK-7. The fatty acids profile mainly consisted of C <subscript>15 : 0</subscript> anteiso, C <subscript>15 : 0</subscript> iso, C <subscript>16 : 0</subscript> iso, and C <subscript>16 : 0</subscript> . The DNA G+C content of the isolated strain determined from the whole-genome sequence was 51 mol%. MS74 <superscript>T</superscript> had an average nucleotide identity (ANI) value of 73.9 % and a digital DNA-DNA hybridization (dDDH) value of 20.6 % with most closely related strain, Paenibacillus vulneris CCUG 53270 <superscript>T</superscript> . On the basis of phenotypic, chemotypic and genotypic evidence, the isolate was identified as representing a novel species of the genus Paenibacillus , for which the name Paenibacillus piri sp. nov. is proposed. The type strain is MS74 <superscript>T</superscript> (=KACC 19385 <superscript>T</superscript> =DSM 105496 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Nucleic Acid Hybridization
Paenibacillus isolation & purification
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Paenibacillus classification
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31661046
- Full Text :
- https://doi.org/10.1099/ijsem.0.003811