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Functional Annotation of ABHD14B, an Orphan Serine Hydrolase Enzyme.
- Source :
-
Biochemistry [Biochemistry] 2020 Jan 21; Vol. 59 (2), pp. 183-196. Date of Electronic Publication: 2019 Sep 13. - Publication Year :
- 2020
-
Abstract
- The metabolic serine hydrolase family is, arguably, one of the largest functional enzyme classes in mammals, including humans, comprising 1-2% of the total proteome. This enzyme family uses a conserved nucleophilic serine residue in the active site to perform diverse hydrolytic reactions and consists of proteases, lipases, esterases, amidases, and transacylases, which are prototypical members of this family. In humans, this enzyme family consists of >250, of which approximately 40% members remain unannotated, in terms of both their endogenous substrates and the biological pathways that they regulate. The enzyme ABHD14B, an outlying member of this family, is also known as CCG1/TAF <subscript>II</subscript> 250-interacting factor B, as it was found to be associated with transcription initiation factor TFIID. The crystal structure of human ABHD14B was determined more than a decade ago; however, its endogenous substrates remain elusive. In this paper, we annotate ABHD14B as a lysine deacetylase (KDAC), showing this enzyme's ability to transfer an acetyl group from a post-translationally acetylated lysine to coenzyme A (CoA), to yield acetyl-CoA, while regenerating the free amine of protein lysine residues. We validate these findings by in vitro biochemical assays using recombinantly purified human ABHD14B in conjunction with cellular studies in a mammalian cell line by knocking down ABHD14B and by identification of a putative substrate binding site. Finally, we report the development and characterization of a much-needed, exquisitely selective ABHD14B antibody, and using it, we map the cellular and tissue distribution of ABHD14B and prospective metabolic pathways that this enzyme might biologically regulate.
- Subjects :
- Acetylation
Acetyltransferases chemistry
Acetyltransferases genetics
Animals
Catalytic Domain
Cell Line, Tumor
Coenzyme A chemistry
Enzyme Assays
Escherichia coli genetics
Gene Knockdown Techniques
HEK293 Cells
Histone Acetyltransferases chemistry
Histone Acetyltransferases genetics
Humans
Hydrolases
Mice, Inbred C57BL
Rabbits
TATA-Binding Protein Associated Factors chemistry
TATA-Binding Protein Associated Factors genetics
Transcription Factor TFIID chemistry
Transcription Factor TFIID genetics
Acetyltransferases metabolism
Histone Acetyltransferases metabolism
TATA-Binding Protein Associated Factors metabolism
Transcription Factor TFIID metabolism
Subjects
Details
- Language :
- English
- ISSN :
- 1520-4995
- Volume :
- 59
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- Biochemistry
- Publication Type :
- Academic Journal
- Accession number :
- 31478652
- Full Text :
- https://doi.org/10.1021/acs.biochem.9b00703