Back to Search
Start Over
Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.
- Source :
-
Systematic and applied microbiology [Syst Appl Microbiol] 2019 Sep; Vol. 42 (5), pp. 126004. Date of Electronic Publication: 2019 Jul 30. - Publication Year :
- 2019
-
Abstract
- Two novel strains, designated 11W25H-1 <superscript>T</superscript> and 8H24J-4-2 <superscript>T</superscript> , were isolated from surface-sterilized plant tissues collected from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region, China. The strains were characterized by a polyphasic approach in order to clarify their taxonomic positions. They were Gram-stain positive, aerobic, non-motile, non-spore-forming and rod-shaped. The 16S rRNA gene sequences of the strains showed highest similarities with Labedella gwakjiensis KCTC 19176 <superscript>T</superscript> (99.2% and 98.9%, respectively) and Labedella endophytica CPCC 203961 <superscript>T</superscript> (98.9% and 99.0%, respectively). The sequence similarity between strains 11W25H-1 <superscript>T</superscript> and 8H24J-4-2 <superscript>T</superscript> was 99.4%. Phylogenetic analyses based on 16S rRNA gene sequences and single-copy phylogenetic marker genes (pMGs) showed that the two strains belonged to the genus Labedella and formed a separate cluster from the closest species L. gwakjiensis KCTC 19176 <superscript>T</superscript> and L. endophytica CPCC 203961 <superscript>T</superscript> . Genomic analyses, including average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH), clearly separated the strains from each other and from the other species of the genus Labedella with values below the thresholds for species delineation. The two strains showed chemotaxonomic characteristics and phenotypic properties in agreement with the description of the genus Labedella and also confirmed the differentiation from the closest species. The data demonstrated that strains 11W25H-1 <superscript>T</superscript> and 8H24J-4-2 <superscript>T</superscript> represented two novel species of the genus Labedella, for which the names Labedella phragmitis sp. nov. (type strain 11W25H-1 <superscript>T</superscript> =JCM 33144 <superscript>T</superscript> =CGMCC 1.16700 <superscript>T</superscript> ) and Labedella populi sp. nov. (type strain 8H24J-4-2 <superscript>T</superscript> =JCM 33143 <superscript>T</superscript> =CGMCC 1.16697 <superscript>T</superscript> ) are proposed.<br /> (Copyright © 2019 Elsevier GmbH. All rights reserved.)
- Subjects :
- Actinobacteria chemistry
Actinobacteria genetics
Base Composition
China
DNA, Bacterial genetics
Fatty Acids chemistry
Genes, Bacterial genetics
Genome, Bacterial genetics
Nucleic Acid Hybridization
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Species Specificity
Vitamin K 2 chemistry
Actinobacteria classification
Phylogeny
Plants microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1618-0984
- Volume :
- 42
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Systematic and applied microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31402073
- Full Text :
- https://doi.org/10.1016/j.syapm.2019.126004