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Vibrio profundi sp. nov., isolated from a deep-sea seamount.

Authors :
Zhang NX
Zhang DC
Qiao NH
Source :
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2019 Nov; Vol. 112 (11), pp. 1603-1610. Date of Electronic Publication: 2019 Jun 06.
Publication Year :
2019

Abstract

A Gram-stain negative, rod-shaped, facultative anaerobic, motile bacterial strain, designated TP187 <superscript>T</superscript> , was isolated from a seamount near the Yap Trench in the tropical western Pacific. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain TP187 <superscript>T</superscript> is related to members of the genus Vibrio and has high 16S rRNA gene sequence similarity with the type strains of Vibrio chagasii (97.3%) and Vibrio gallaecicus (97.1%). Sequence similarities to all other type strains of current species of the genus Vibrio were below 97%. The polar lipids profile was found to contain diphosphatidylglycerol, phosphatidylglycerol, an aminophospholipid, two aminolipids, four phospholipids and eleven unidentified polar lipids. Ubiquinone Q-8 was detected as the predominant quinone. The genomic DNA G + C content of strain TP187 <superscript>T</superscript> was determined to be 43.7 mol%. In addition, the maximum values of in silico DNA-DNA hybridization (isDDH) and average nucleotide identity (ANI) between strain TP187 <superscript>T</superscript> with V. chagasii LMG 21353 <superscript>T</superscript> were 22.40 and 77.50% respectively. Both values are below the proposed cutoff levels for species delineation, i.e. 70 and 95%, respectively. Combined data from phenotypic, phylogenetic, isDDH and ANI data demonstrated that the strain TP187 <superscript>T</superscript> is representative of a novel species of the genus Vibrio, for which we propose the name Vibrio profundi sp. nov. (type strain TP187 <superscript>T</superscript>  = KACC 18555 <superscript>T</superscript>  = CGMCC 1.15395 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1572-9699
Volume :
112
Issue :
11
Database :
MEDLINE
Journal :
Antonie van Leeuwenhoek
Publication Type :
Academic Journal
Accession number :
31172330
Full Text :
https://doi.org/10.1007/s10482-019-01286-4