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Yersinia hibernica sp. nov., isolated from pig-production environments.

Authors :
Nguyen SV
Muthappa DM
Hurley D
Donoghue O
McCabe E
Anes J
Schaffer K
Murphy BP
Buckley JF
Fanning S
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2019 Jul; Vol. 69 (7), pp. 2023-2027. Date of Electronic Publication: 2019 May 08.
Publication Year :
2019

Abstract

A Gram-stain-negative, rod-shaped strain isolated from pig-production environments was identified as a new species within the genus Yersinia using multifaceted genomic and biochemical approaches. The genome of this strain was closed using a hybrid assembly approach combining both high accuracy short read sequencing data with long read sequencing technology. Phylogenetic analysis of the 16S rRNA gene showed ~98 % similarity to Yersinia kristensenii and ~98 % similarity to Yersinia enterocolitica. Average nucleotide identity (OrthoANI) values were calculated as 85.79 % to Y. kristensenii ATCC 33638 <superscript>T</superscript> and 85.73 % to Y. enterocolitica ATCC 9610 <superscript>T</superscript> thereby providing evidence that this isolate should be considered as a novel species. The type strain is CFS1934 <superscript>T</superscript> (=NCTC 14222 <superscript>T</superscript> =LMG 31076 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1466-5034
Volume :
69
Issue :
7
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
31066656
Full Text :
https://doi.org/10.1099/ijsem.0.003422