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Characterization of an Unusual DS-1-Like G8P[8] Rotavirus Strain from Japan in 2017: Evolution of Emerging DS-1-Like G8P[8] Strains through Reassortment.
- Source :
-
Japanese journal of infectious diseases [Jpn J Infect Dis] 2019 Jul 24; Vol. 72 (4), pp. 256-260. Date of Electronic Publication: 2019 Feb 28. - Publication Year :
- 2019
-
Abstract
- The emergence of unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P[8] strains) has been reported in several Asian countries. During the rotavirus surveillance program in Japan in 2017, a DS-1-like G8P[8] strain (RVA/Human-wt/JPN/SO1162/2017/G8P[8]) was identified in 43 rotavirus-positive stool samples. Strain SO1162 was shown to have a unique genotype constellation, including genes from both genogroup 1 and 2: G8-P[8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Phylogenetic analysis revealed that the VP1 gene of strain SO1162 appeared to have originated from DS-1-like G1P[8] strains from Thailand and Vietnam, while the remaining 10 genes were closely related to those of previously reported DS-1-like G8P[8] strains. Thus, SO1162 was suggested to be a reassortant strain that acquired the VP1 gene from Southeast Asian DS-1-like G1P[8] strains on the genetic background of co-circulating DS-1-like G8P[8] strains. Our findings provide important insights into the evolutionary dynamics of emerging DS-1-like G8P[8] strains.
- Subjects :
- Animals
Cattle
Child, Preschool
Evolution, Molecular
Feces virology
Genes, Viral genetics
Genome, Viral genetics
Genotype
Humans
Japan
Phylogeny
RNA, Viral genetics
Reassortant Viruses classification
Reassortant Viruses isolation & purification
Rotavirus classification
Rotavirus isolation & purification
Sequence Analysis, DNA
Reassortant Viruses genetics
Rotavirus genetics
Rotavirus Infections virology
Subjects
Details
- Language :
- English
- ISSN :
- 1884-2836
- Volume :
- 72
- Issue :
- 4
- Database :
- MEDLINE
- Journal :
- Japanese journal of infectious diseases
- Publication Type :
- Academic Journal
- Accession number :
- 30814461
- Full Text :
- https://doi.org/10.7883/yoken.JJID.2018.484