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[A trial of simple and rapid carbapenemase big five gene analysis using LAMP method].

Authors :
Funashima Y
Sugahara K
Hirata Y
Kato K
Sato K
Sasaki Y
Nagasawa Z
Umemura T
Source :
Rinsho Biseibutsu Jinsoku Shindan Kenkyukai shi = JARMAM : Journal of the Association for Rapid Method and Automation in Microbiology [Rinsho Biseibutshu Jinsoku Shindan Kenkyukai Shi] 2018 Dec 25; Vol. 28 (2), pp. 77-83.
Publication Year :
2018

Abstract

Reliable detection and typing of carbapenemase is important in the treatment of infectious diseases. In this study we newly designed LAMP primer based on the latest information, and established a detection method for Carbapenemase Big five gene. For DNA extraction from strains, alkaline boiling method and commercial kit were used. The reaction temperatures of the LAMP method was VIM: 65°C, NDM: 63°C, KPC: 65°C, OXA-48-like: 65°C, IMP: 61°C. And simultaneous LAMP method was at 63°C, for 60 min. It was possible to detect up to 10 <superscript>3</superscript> copies/ml. The reactivity of LAMP using 36 strains verified by Multiplex-PCR was VIM (4/4: number of LAMP method positive strains/number of strains evaluated), NDM (2/2), KPC (4/4), OXA-48-like (4/4), IMP (17/17). The type of carbapenemase determined by the LAMP method were all consistent with multiplex PCR. All strains were detected within 30 min. In VIM, both VIM-1-like and VIM-2-like were able to detect. In this study, although the number and variation of the strains evaluated was limited, LAMP method was clinically useful as a simple and rapid carbapenemase detection method.

Details

Language :
Japanese
ISSN :
0915-1753
Volume :
28
Issue :
2
Database :
MEDLINE
Journal :
Rinsho Biseibutsu Jinsoku Shindan Kenkyukai shi = JARMAM : Journal of the Association for Rapid Method and Automation in Microbiology
Publication Type :
Academic Journal
Accession number :
30630333