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RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia.

Authors :
Ee Uli J
Yong CS
Yeap SK
Alitheen NB
Rovie-Ryan JJ
Mat Isa N
Tan SG
Source :
BMC research notes [BMC Res Notes] 2018 Dec 22; Vol. 11 (1), pp. 923. Date of Electronic Publication: 2018 Dec 22.
Publication Year :
2018

Abstract

Objective: Using high-throughput RNA sequencing technology, this study aimed to sequence the transcriptome of kidney and liver tissues harvested from Peninsular Malaysia cynomolgus macaque (Macaca fascicularis). M. fascicularis are significant nonhuman primate models in the biomedical field, owing to the macaque's biological similarities with humans. The additional transcriptomic dataset will supplement the previously described Peninsular Malaysia M. fascicularis transcriptomes obtained in a past endeavour.<br />Results: A total of 75,350,240 sequence reads were obtained via Hi-seq 2500 sequencing technology. A total of 5473 significant differentially expressed genes were called. Gene ontology functional categorisation showed that cellular process, catalytic activity, and cell part categories had the highest number of expressed genes, while the metabolic pathways category possessed the highest number of expressed genes in the KEGG pathway analysis. The additional sequence dataset will further enrich existing M. fascicularis transcriptome assemblies, and provide a dataset for further downstream studies.

Details

Language :
English
ISSN :
1756-0500
Volume :
11
Issue :
1
Database :
MEDLINE
Journal :
BMC research notes
Publication Type :
Academic Journal
Accession number :
30577850
Full Text :
https://doi.org/10.1186/s13104-018-4014-1