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Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Authors :
Köhler S
Carmody L
Vasilevsky N
Jacobsen JOB
Danis D
Gourdine JP
Gargano M
Harris NL
Matentzoglu N
McMurry JA
Osumi-Sutherland D
Cipriani V
Balhoff JP
Conlin T
Blau H
Baynam G
Palmer R
Gratian D
Dawkins H
Segal M
Jansen AC
Muaz A
Chang WH
Bergerson J
Laulederkind SJF
Yüksel Z
Beltran S
Freeman AF
Sergouniotis PI
Durkin D
Storm AL
Hanauer M
Brudno M
Bello SM
Sincan M
Rageth K
Wheeler MT
Oegema R
Lourghi H
Della Rocca MG
Thompson R
Castellanos F
Priest J
Cunningham-Rundles C
Hegde A
Lovering RC
Hajek C
Olry A
Notarangelo L
Similuk M
Zhang XA
Gómez-Andrés D
Lochmüller H
Dollfus H
Rosenzweig S
Marwaha S
Rath A
Sullivan K
Smith C
Milner JD
Leroux D
Boerkoel CF
Klion A
Carter MC
Groza T
Smedley D
Haendel MA
Mungall C
Robinson PN
Source :
Nucleic acids research [Nucleic Acids Res] 2019 Jan 08; Vol. 47 (D1), pp. D1018-D1027.
Publication Year :
2019

Abstract

The Human Phenotype Ontology (HPO)-a standardized vocabulary of phenotypic abnormalities associated with 7000+ diseases-is used by thousands of researchers, clinicians, informaticians and electronic health record systems around the world. Its detailed descriptions of clinical abnormalities and computable disease definitions have made HPO the de facto standard for deep phenotyping in the field of rare disease. The HPO's interoperability with other ontologies has enabled it to be used to improve diagnostic accuracy by incorporating model organism data. It also plays a key role in the popular Exomiser tool, which identifies potential disease-causing variants from whole-exome or whole-genome sequencing data. Since the HPO was first introduced in 2008, its users have become both more numerous and more diverse. To meet these emerging needs, the project has added new content, language translations, mappings and computational tooling, as well as integrations with external community data. The HPO continues to collaborate with clinical adopters to improve specific areas of the ontology and extend standardized disease descriptions. The newly redesigned HPO website (www.human-phenotype-ontology.org) simplifies browsing terms and exploring clinical features, diseases, and human genes.

Details

Language :
English
ISSN :
1362-4962
Volume :
47
Issue :
D1
Database :
MEDLINE
Journal :
Nucleic acids research
Publication Type :
Academic Journal
Accession number :
30476213
Full Text :
https://doi.org/10.1093/nar/gky1105