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Simplicispira lacusdiani sp. nov., a novel betaproteobacterium isolated from a freshwater reservoir.

Authors :
Shi YL
Sun Y
Jiang ZM
Ruan ZY
Su J
Yu LY
Zhang YQ
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2019 Jan; Vol. 69 (1), pp. 129-133. Date of Electronic Publication: 2018 Nov 15.
Publication Year :
2019

Abstract

A Gram-stain-negative, motile, rod-shaped bacterium, designated CPCC 100842 <superscript>T</superscript> , was isolated from a freshwater reservoir in south-west China. The 16S rRNA gene sequence comparison of strain CPCC 100842 <superscript>T</superscript> with the available sequences in the GenBank database showed that the isolate was closely related to members of the family Comamonadaceae, with the highest similarities to Simplicispira metamorpha DSM 1837 <superscript>T</superscript> (98.05 %), Simplicispira limi KCTC 12608 <superscript>T</superscript> (97.86 %), Simplicispira psychrophila LMG 5408 <superscript>T</superscript> (97.04 %) and Simplicispira piscis JCM 19291 <superscript>T</superscript> (97.0 %). In the phylogenetic tree based on 16S rRNA gene sequences, strain CPCC 100842 <superscript>T</superscript> formed a distinct phylogenetic subclade within the genus Simplicispira. The major cellular fatty acids were as C16 : 0 and summed feature 3 (C16 : 1 ω7c/C16 : 1ω6c). Q-8 was detected as the only respiratory quinone. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid and glycolipid were found in the polar lipid extraction. The genomic DNA G+C content was 67.4 mol%. The average nucleotide identity value was 80.4 % by comparing the draft genome sequences of strain CPCC 100842 <superscript>T</superscript> and S. metamorpha DSM 1837 <superscript>T</superscript> . The DNA-DNA hybridization result between strain CPCC 100842 <superscript>T</superscript> and S. metamorpha DSM 1837 <superscript>T</superscript> showed 37±3 % genomic relatedness. On the basis of the genotypic analysis and phenotypic characteristics, we propose that strain CPCC 100842 <superscript>T</superscript> represents a novel species of the genus Simplicispira in the family Comamonadaceae with the name Simplicispira lacusdiani sp. nov. Strain CPCC 100842 <superscript>T</superscript> (=KCTC 52093 <superscript>T</superscript> =DSM 102231 <superscript>T</superscript> ) is the type strain of the species.

Details

Language :
English
ISSN :
1466-5034
Volume :
69
Issue :
1
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
30431413
Full Text :
https://doi.org/10.1099/ijsem.0.003112