Back to Search Start Over

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Authors :
Mitchell AL
Attwood TK
Babbitt PC
Blum M
Bork P
Bridge A
Brown SD
Chang HY
El-Gebali S
Fraser MI
Gough J
Haft DR
Huang H
Letunic I
Lopez R
Luciani A
Madeira F
Marchler-Bauer A
Mi H
Natale DA
Necci M
Nuka G
Orengo C
Pandurangan AP
Paysan-Lafosse T
Pesseat S
Potter SC
Qureshi MA
Rawlings ND
Redaschi N
Richardson LJ
Rivoire C
Salazar GA
Sangrador-Vegas A
Sigrist CJA
Sillitoe I
Sutton GG
Thanki N
Thomas PD
Tosatto SCE
Yong SY
Finn RD
Source :
Nucleic acids research [Nucleic Acids Res] 2019 Jan 08; Vol. 47 (D1), pp. D351-D360.
Publication Year :
2019

Abstract

The InterPro database (http://www.ebi.ac.uk/interpro/) classifies protein sequences into families and predicts the presence of functionally important domains and sites. Here, we report recent developments with InterPro (version 70.0) and its associated software, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website. These developments extend and enrich the information provided by InterPro, and provide greater flexibility in terms of data access. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB, and discuss how our evaluation of residue coverage may help guide future curation activities.

Details

Language :
English
ISSN :
1362-4962
Volume :
47
Issue :
D1
Database :
MEDLINE
Journal :
Nucleic acids research
Publication Type :
Academic Journal
Accession number :
30398656
Full Text :
https://doi.org/10.1093/nar/gky1100