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The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters.

Authors :
Blin K
Pascal Andreu V
de Los Santos ELC
Del Carratore F
Lee SY
Medema MH
Weber T
Source :
Nucleic acids research [Nucleic Acids Res] 2019 Jan 08; Vol. 47 (D1), pp. D625-D630.
Publication Year :
2019

Abstract

Natural products originating from microorganisms are frequently used in antimicrobial and anticancer drugs, pesticides, herbicides or fungicides. In the last years, the increasing availability of microbial genome data has made it possible to access the wealth of biosynthetic clusters responsible for the production of these compounds by genome mining. antiSMASH is one of the most popular tools in this field. The antiSMASH database provides pre-computed antiSMASH results for many publicly available microbial genomes and allows for advanced cross-genome searches. The current version 2 of the antiSMASH database contains annotations for 6200 full bacterial genomes and 18,576 bacterial draft genomes and is available at https://antismash-db.secondarymetabolites.org/.

Details

Language :
English
ISSN :
1362-4962
Volume :
47
Issue :
D1
Database :
MEDLINE
Journal :
Nucleic acids research
Publication Type :
Academic Journal
Accession number :
30395294
Full Text :
https://doi.org/10.1093/nar/gky1060