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Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Nov; Vol. 68 (11), pp. 3416-3423. Date of Electronic Publication: 2018 Sep 11. - Publication Year :
- 2018
-
Abstract
- The novel strain IHBB 11108 <superscript>T</superscript> was a psychrotolerant and alkaliphilic bacterium isolated from the subsurface water of Chandra Tal Lake in the Lahaul-Spiti valley located in the Indian trans-Himalayas. Cells were Gram-stain-positive, aerobic, non-motile, catalase-positive and oxidase-negative. The strain grew at 5-37 °C (optimum 28 °C), pH 5.0-12.0 (optimum pH 7.0) and with up to 8 % NaCl (optimum 1 %). The 16S rRNA gene sequence analysis revealed the highest relatedness of strain IHBB 11108 <superscript>T</superscript> with Psychromicrobium silvestre DSM 102047 <superscript>T</superscript> (97.5 %), Arthrobacter russicus DSM 14555 <superscript>T</superscript> (97.4 %) and Renibacterium salmoninarum ATCC 33209 <superscript>T</superscript> (97.4 %). The strain contained a quinone system with 57.2 % MK-9(H2), 39.1 % MK-10(H2), 3.0 % MK-8(H2) and 0.7 % MK-7(H2). The polar lipids detected were diphosphatidylglycerol, dimannosylglyceride, phosphatidylinositol, phosphatidylglycerol, monogalactosyldiacylglycerol, one unidentified glycolipid and four unidentified lipids. The cell-wall peptidoglycan structure type was A3α l-Lys-l-Thr-l-Ala with substitution of the α-carboxyl group of d-Glu by alanine amide. Anteiso-C15 : 0, iso-C16 : 0 and anteiso-C17 : 0 were the predominant fatty acids. The genomic DNA G+C content was 59.0 mol%. The DNA-DNA relatedness of strain IHBB 11108 <superscript>T</superscript> was 46.7±2.2, 43.1±2.5 and 19.1±2.4 % with P. silvestre DSM 102047 <superscript>T</superscript> , A. russicus DSM 14555 <superscript>T</superscript> and R. salmoninarum ATCC 33209 <superscript>T</superscript> , respectively. On the basis of the results of the phenotypic, chemotaxonomic and phylogenetic analyses, IHBB 11108 <superscript>T</superscript> is considered to represent a novel species of the genus Psychromicrobium for which the name Psychromicrobium lacuslunae sp. nov. is proposed. The type strain is IHBB 11108 <superscript>T</superscript> (=MTCC 12460 <superscript>T</superscript> =MCC 2780 <superscript>T</superscript> =JCM 31143 <superscript>T</superscript> =KACC 19070 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Glycolipids chemistry
India
Micrococcaceae genetics
Micrococcaceae isolation & purification
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Vitamin K 2 chemistry
Altitude
Lakes microbiology
Micrococcaceae classification
Phylogeny
Water Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 68
- Issue :
- 11
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 30204584
- Full Text :
- https://doi.org/10.1099/ijsem.0.002997