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Paenibacillus helianthi sp. nov., a nitrogen fixing species isolated from the rhizosphere of Helianthus annuus L.
- Source :
-
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2018 Dec; Vol. 111 (12), pp. 2463-2471. Date of Electronic Publication: 2018 Aug 02. - Publication Year :
- 2018
-
Abstract
- Three facultatively anaerobic endospore-forming bacteria were isolated from the rhizosphere of sunflowers grown in fields of Rio Grande do Sul State, Brazil. The designated type strain P26E <superscript>T</superscript> was previously identified as a sunflower growth promoting bacterium and is able to fix nitrogen and to excrete ammonia. According to analyses of 16S rRNA gene sequences, P26E <superscript>T</superscript> presented similarity values above 98.8% in relation to Paenibacillus azotifigens NF2-4-5 <superscript>T</superscript> , Paenibacillus graminis RSA19 <superscript>T</superscript> , Paenibacillus jilunlii Be17 <superscript>T</superscript> , Paenibacillus salinicaeni LAM0A28 <superscript>T</superscript> , and Paenibacillus sonchi X19-5 <superscript>T</superscript> . Phylogenetic reconstructions based on 16S rRNA gene and core proteome data showed that the strains P26E <superscript>T</superscript> , P3E and P32E form a distinct clade, which did not include any type strain of the currently described Paenibacillus species. Also, genomic comparisons using average nucleotide identity (ANI), Orthologous ANI and in silico DNA-DNA hybridization revealed similarity ranges below the recommended thresholds when the three isolates from sunflower were compared to their close relatives. The DNA G + C content of strain P26E <superscript>T</superscript> was determined to be 49.4 mol%. The major cellular fatty acids are anteiso-C <subscript>15:0</subscript> and iso-C <subscript>15:0</subscript> , representing about 58 and 14% of the total fatty acids in P26E <superscript>T</superscript> , respectively. Based on different taxonomic genomic metrics, phylogeny, and phenotypic data, we propose that strain P26E <superscript>T</superscript> (= DSM 102269 = BR10509) represents a novel species within the genus Paenibacillus, for which the name Paenibacillus helianthi sp. nov. is proposed.
- Subjects :
- Anaerobiosis physiology
Bacterial Typing Techniques
Base Composition
Brazil
Fatty Acids biosynthesis
Genotype
Nitrogen metabolism
Paenibacillus classification
Paenibacillus isolation & purification
Paenibacillus metabolism
Phenotype
Rhizosphere
Spores, Bacterial physiology
DNA, Bacterial genetics
Helianthus microbiology
Nitrogen Fixation physiology
Paenibacillus genetics
Phylogeny
RNA, Ribosomal, 16S genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1572-9699
- Volume :
- 111
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- Antonie van Leeuwenhoek
- Publication Type :
- Academic Journal
- Accession number :
- 30073429
- Full Text :
- https://doi.org/10.1007/s10482-018-1135-4